RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 PHPT1Q9NRX4 125 aaPredicted RBP12.03□□□□□ -0.48
LDLR-207ENST00000558013 MRPS18AQ9NVS2 196 aaKnown RBP12.03□□□□□ -0.48
LDLR-207ENST00000558013 DPP7Q9UHL4 492 aa12.03□□□□□ -0.48
LDLR-207ENST00000558013 CBLCQ9ULV8 474 aa12.03□□□□□ -0.48
LDLR-207ENST00000558013 TTC36A6NLP5 189 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 CACNB4O00305 520 aaPredicted RBP12.02□□□□□ -0.48
LDLR-207ENST00000558013 STK25O00506 426 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 GABRPO00591 440 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 PSKH1P11801 424 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 MYL9P24844 172 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 FXYD6P3P58550 94 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 SGCGQ13326 291 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 RUNX3Q13761 415 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 DUSP5Q16690 384 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 BHLHB9Q6PI77 547 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 PRSS41Q7RTY9 318 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 MRGPREQ86SM8 312 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 PFN4Q8NHR9 129 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 ATF6BQ99941 703 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 TMEM246Q9BRR3 403 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 CAPN10Q9HC96 672 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 ZNF780BQ9Y6R6 833 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 SPTBP11277 2137 aa12.02□□□□□ -0.48
LDLR-207ENST00000558013 CENPXA8MT69 81 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 REM1O75628 298 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 GCGRP47871 477 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 IL18Q14116 193 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 PUS10Q3MIT2 529 aaKnown RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 EOGTQ5NDL2 527 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 TMEM91Q6ZNR0 172 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 SFTPA2Q8IWL1 248 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 SLC7A6Q92536 515 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 TTTY10Q9BZA0 68 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 RNF32Q9H0A6 362 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 MOV10Q9HCE1 1003 aaKnown RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 IL20Q9NYY1 176 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 NLKQ9UBE8 527 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 SMLR1H3BR10 107 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 PEX12O00623 359 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 P2RX6O15547 441 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 SLC2A2P11168 524 aaPredicted RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 ERVK-21P61565 698 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 SRSF5Q13243 272 aaKnown RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 CCDC85BQ15834 202 aaPredicted RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 ZNF836Q6ZNA1 936 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 ZNF620Q6ZNG0 422 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 ZNF513Q8N8E2 541 aaPredicted RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 POGLUT1Q8NBL1 392 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 ACOT11Q8WXI4 607 aaPredicted RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 C10orf90Q96M02 699 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 PITHD1Q9GZP4 211 aaPredicted RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 RSPH9Q9H1X1 276 aaPredicted RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 PPP1R3EQ9H7J1 279 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 FBXL4Q9UKA2 621 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 MRPS2Q9Y399 296 aaKnown RBP12.02□□□□□ -0.49
LDLR-207ENST00000558013 GRIP1Q9Y3R0 1128 aa12.02□□□□□ -0.49
LDLR-207ENST00000558013 LOC102723532A0A0G2JNH3 316 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 E9PI62 339 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 LDB3O75112 727 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 MRPL3P09001 348 aaKnown RBP12.01□□□□□ -0.49
LDLR-207ENST00000558013 CLUP10909 449 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 RFX3P48380 749 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 PGGHGQ32M88 737 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 PPP2R2DQ66LE6 453 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 MFSD12Q6NUT3 480 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 CD200R1LQ6Q8B3 271 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 TMEM99Q8N816 258 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 BMPERQ8N8U9 685 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 TTLQ8NG68 377 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 SFXN5Q8TD22 340 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 LCN9Q8WX39 176 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 TIMP4Q99727 224 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 ACTRT3Q9BYD9 372 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 SLC17A9Q9BYT1 436 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 UBQLN3Q9H347 655 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 IGFLR1Q9H665 355 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 RNF121Q9H920 327 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 KCNE5Q9UJ90 142 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 GSTK1Q9Y2Q3 226 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 CTSVO60911 334 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 CA3P07451 260 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 MAKP20794 623 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 DDOSTP39656 456 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 PPP2CBP62714 309 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 PPP2CAP67775 309 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 DMPKQ09013 629 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 ZC3H14Q6PJT7 736 aaKnown RBP12.01□□□□□ -0.49
LDLR-207ENST00000558013 RDH10Q8IZV5 341 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 GDPD1Q8N9F7 314 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 RNF170Q96K19 258 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 DEPDC7Q96QD5 511 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 GFM1Q96RP9 751 aaKnown RBP12.01□□□□□ -0.49
LDLR-207ENST00000558013 ADAP2Q9NPF8 381 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 ITGB1BP2Q9UKP3 347 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 ZNF443Q9Y2A4 671 aaPredicted RBP12.01□□□□□ -0.49
LDLR-207ENST00000558013 EXOSC1Q9Y3B2 195 aaKnown RBP12.01□□□□□ -0.49
LDLR-207ENST00000558013 WDR45Q9Y484 360 aa12.01□□□□□ -0.49
LDLR-207ENST00000558013 ARHGEF17Q96PE2 2063 aaPredicted RBP12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3DA0A087WVF3 549 aa12□□□□□ -0.49
LDLR-207ENST00000558013 TBC1D3IA0A087WXS9 549 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms