RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SNTB2Q13425 540 aaKnown RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 GRB14Q14449 540 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 FAM69AQ5T7M9 428 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 AFMIDQ63HM1 303 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 TMEM71Q6P5X7 295 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 OR2W3Q7Z3T1 314 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 KLHDC8BQ8IXV7 354 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 CDK20Q8IZL9 346 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 GPR137CQ8N3F9 429 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 CPEB3Q8NE35 698 aaKnown RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 TGM7Q96PF1 710 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 CERS4Q9HA82 394 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 SLC6A13Q9NSD5 602 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 ZMYM5Q9UJ78 669 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 GNG14A0A1W2PPG7 69 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 ZAR1LA6NP61 321 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 NUDT19A8MXV4 375 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 NSA2O95478 260 aaKnown RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 SDHBP21912 280 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 MAT2AP31153 395 aaKnown RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 RAB8AP61006 207 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 SNRPGP62308 76 aaKnown RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 DYRK1AQ13627 763 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 NHLRC1Q6VVB1 395 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 GLDNQ6ZMI3 551 aaPredicted RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 PYROXD2Q8N2H3 581 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 PPHLN1Q8NEY8 458 aaKnown RBP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 KHSRPQ92945 711 aaKnown RBP eCLIP12.97□□□□□ -0.33
SHMT2-226ENST00000556825 PHYHIPLQ96FC7 376 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 C12orf42Q96LP6 360 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 TAAR9Q96RI9 348 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 OSMRQ99650 979 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 NDUFAF3Q9BU61 184 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 MIEF1Q9NQG6 463 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 SEMA3GQ9NS98 782 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 FLRT1Q9NZU1 646 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 SLC2A6Q9UGQ3 507 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 OPN4Q9UHM6 478 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF225Q9UK10 706 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 FLVCR2Q9UPI3 526 aa12.97□□□□□ -0.33
SHMT2-226ENST00000556825 OR6C76A6NM76 312 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 EIF4EP06730 217 aaKnown RBP12.96□□□□□ -0.33
SHMT2-226ENST00000556825 SNRPCP09234 159 aaKnown RBP12.96□□□□□ -0.33
SHMT2-226ENST00000556825 ACHEP22303 614 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 CNR2P34972 360 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF140P52738 457 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-226ENST00000556825 CDK6Q00534 326 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 OR4D1Q15615 310 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 ZNF699Q32M78 642 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 FNDC3BQ53EP0 1204 aaKnown RBP12.96□□□□□ -0.33
SHMT2-226ENST00000556825 TMEM201Q5SNT2 666 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 ATAT1Q5SQI0 421 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 KIAA0930Q6ICG6 404 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-226ENST00000556825 ARMC6Q6NXE6 501 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 RNF165Q6ZSG1 346 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 TECPR1Q7Z6L1 1165 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 TMEM200AQ86VY9 491 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 OR6V1Q8N148 313 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 OR11G2Q8NGC1 345 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 RHEBL1Q8TAI7 183 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 MALSU1Q96EH3 234 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 ZBTB45Q96K62 511 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-226ENST00000556825 SPACA7Q96KW9 195 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 COLEC11Q9BWP8 271 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 C1GALT1Q9NS00 363 aa12.96□□□□□ -0.33
SHMT2-226ENST00000556825 MRPS18CQ9Y3D5 142 aaKnown RBP12.96□□□□□ -0.33
SHMT2-226ENST00000556825 SLC25A12O75746 678 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 YIF1AO95070 293 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 IL33O95760 270 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 CD3GP09693 182 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 ATP6V1E1P36543 226 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 EPHB3P54753 998 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 CDKN2DP55273 166 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 SOX10P56693 466 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 HSD11B2P80365 405 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 RBM39Q14498 530 aaKnown RBP12.96□□□□□ -0.34
SHMT2-226ENST00000556825 PAFAH1B3Q15102 231 aaKnown RBP12.96□□□□□ -0.34
SHMT2-226ENST00000556825 SF1Q15637 639 aaKnown RBP12.96□□□□□ -0.34
SHMT2-226ENST00000556825 UGCGQ16739 394 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 LRIF1Q5T3J3 769 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 FAM46CQ5VWP2 391 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 ACSM5Q6NUN0 579 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 PDZD4Q76G19 769 aaPredicted RBP12.96□□□□□ -0.34
SHMT2-226ENST00000556825 VSIG10LQ86VR7 867 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 ANGPTL5Q86XS5 388 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 STK40Q8N2I9 435 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 RYBPQ8N488 228 aaPredicted RBP12.96□□□□□ -0.34
SHMT2-226ENST00000556825 STOML3Q8TAV4 291 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 TMEM208Q9BTX3 173 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 OR51V1Q9H2C8 321 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 PTGES2Q9H7Z7 377 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 ACKR4Q9NPB9 350 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 MED17Q9NVC6 651 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 ASF1BQ9NVP2 202 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 ZNF69Q9UC07 566 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 FTSJ1Q9UET6 329 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 GDF2Q9UK05 429 aaPredicted RBP12.96□□□□□ -0.34
SHMT2-226ENST00000556825 CBLCQ9ULV8 474 aa12.96□□□□□ -0.34
SHMT2-226ENST00000556825 MIA3Q5JRA6 1907 aa12.95□□□□□ -0.34
SHMT2-226ENST00000556825 OR14I1A6ND48 311 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms