RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	TMEM44	Q2T9K0	475 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	CHRFAM7A	Q494W8	412 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	GTF2IRD2B	Q6EKJ0	949 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	GTF2IRD2	Q86UP8	949 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	WDR75	Q8IWA0	830 aa	Known RBP	11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	FAM9C	Q8IZT9	166 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	STEAP2	Q8NFT2	490 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	LILRB1	Q8NHL6	650 aa	Predicted RBP	11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	FBXO25	Q8TCJ0	367 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	SMAP2	Q8WU79	429 aa	Predicted RBP	11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	FBXW5	Q969U6	566 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZBED6CL	Q96FA7	236 aa	Predicted RBP	11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	BBS4	Q96RK4	519 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	HBEGF	Q99075	208 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	ANKZF1	Q9H8Y5	726 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	FAM120C	Q9NX05	1096 aa	Known RBP	11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	DMGDH	Q9UI17	866 aa	Known RBP	11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	MCTS1	Q9ULC4	181 aa	Known RBP	11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	NFU1	Q9UMS0	254 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	LIPT1	Q9Y234	373 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	RNF115	Q9Y4L5	304 aa		11.32	□□□□□ -0.6
SHMT2-223	ENST00000556689	ROS1	P08922	2347 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689		A0A087WV62	115 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	IGLV3-32	A0A0A0MS00	114 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689		A8MV72	311 aa	Predicted RBP	11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	SHISA8	B8ZZ34	492 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	GMFG	O60234	142 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	PCDH7	O60245	1069 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	IL33	O95760	270 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	KRT6A	P02538	564 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	KRT6B	P04259	564 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	FES	P07332	822 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	CD3E	P07766	207 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	SOD3	P08294	240 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	RPS17	P08708	135 aa	Known RBP	11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	DANCR	P0C864	163 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	KRT6C	P48668	564 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	PSMD4	P55036	377 aa	Known RBP	11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	RAE1	P78406	368 aa	Known RBP	11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	EMB	Q6PCB8	327 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	EXOC3L1	Q86VI1	746 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	OR10D3	Q8NH80	312 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZNF483	Q8TF39	744 aa	Predicted RBP	11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	C16orf78	Q8WTQ4	265 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	TBL1XR1	Q9BZK7	514 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	SHCBP1L	Q9BZQ2	653 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	SLCO5A1	Q9H2Y9	848 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	ESRP2	Q9H6T0	727 aa	Known RBP	11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689		Q9N2J8	555 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	NGB	Q9NPG2	151 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	XPR1	Q9UBH6	696 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	VDAC3	Q9Y277	283 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	SNX8	Q9Y5X2	465 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	STAB1	Q9NY15	2570 aa		11.31	□□□□□ -0.6
SHMT2-223	ENST00000556689	MXRA5	Q9NR99	2828 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	CCDC151	A5D8V7	595 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	MANBA	O00462	879 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	CLOCK	O15516	846 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	OR4F21	O95013	312 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	ANGPTL1	O95841	491 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	C8B	P07358	591 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	COL6A2	P12110	1019 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	CHN1	P15882	459 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	PHB	P35232	272 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	HSD17B3	P37058	310 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	CDKN1A	P38936	164 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	RFX3	P48380	749 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	PRR5	P85299	388 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	CLC	Q05315	142 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	CSTF3	Q12996	717 aa	Known RBP	11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZNHIT3	Q15649	155 aa	Predicted RBP	11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	TSNAXIP1	Q2TAA8	658 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	NCMAP	Q5T1S8	102 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	MFSD12	Q6NUT3	480 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	HSD17B8	Q92506	261 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	S100PBP	Q96BU1	408 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	MRPL57	Q9BQC6	102 aa	Known RBP	11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	PARD6B	Q9BYG5	372 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	C12orf49	Q9H741	205 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZNF225	Q9UK10	706 aa		11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	C19orf53	Q9UNZ5	99 aa	Predicted RBP	11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689	MAGED1	Q9Y5V3	778 aa	Predicted RBP	11.3	□□□□□ -0.6
SHMT2-223	ENST00000556689		A0A087WZY1	265 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689		A0A1W2PP18	115 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	MYO1G	B0I1T2	1018 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	UPK1A	O00322	258 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	TNFSF11	O14788	317 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ADAMDEC1	O15204	470 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	PHF1	O43189	567 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	CXCL13	O43927	109 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ADAM11	O75078	769 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ULK1	O75385	1050 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	SLITRK5	O94991	958 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	UTS2	O95399	124 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	F12	P00748	615 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	OPN1LW	P04000	364 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	JUN	P05412	331 aa	Known RBP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	ZNF17	P17021	662 aa		11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	NCBP2	P52298	156 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
SHMT2-223	ENST00000556689	VSNL1	P62760	191 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms