RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 DUSP19Q8WTR2 217 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 IGFBPL1Q8WX77 278 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 ELP4Q96EB1 424 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 METTL2AQ96IZ6 378 aaKnown RBP11.55□□□□□ -0.56
PTCH1-221ENST00000550914 AMDHD1Q96NU7 426 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 HS3ST6Q96QI5 342 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 EBPLQ9BY08 206 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 TBL1XR1Q9BZK7 514 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 RTN4RQ9BZR6 473 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 FANCFQ9NPI8 374 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 PLSCR4Q9NRQ2 329 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 DDX18Q9NVP1 670 aaKnown RBP11.55□□□□□ -0.56
PTCH1-221ENST00000550914 EMC9Q9Y3B6 208 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 FREM1Q5H8C1 2179 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 ABCA1O95477 2261 aa11.55□□□□□ -0.56
PTCH1-221ENST00000550914 CADP27708 2225 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 A0A087WZY1 265 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 UTS2O95399 124 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 ABHD2P08910 425 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 NR1H2P55055 460 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 BTKQ06187 659 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 SGCBQ16585 318 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 GLE1Q53GS7 698 aaKnown RBP11.54□□□□□ -0.56
PTCH1-221ENST00000550914 SPDYAQ5MJ70 313 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 SH2D5Q6ZV89 423 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 PLEKHM3Q6ZWE6 761 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 ZNF550Q7Z398 422 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 TRIM46Q7Z4K8 759 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 MARCH3Q86UD3 253 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 GGNQ86UU5 652 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 ACMSDQ8TDX5 336 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 IFT81Q8WYA0 676 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 HOXB13Q92826 284 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-221ENST00000550914 CCDC126Q96EE4 140 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 PERPQ96FX8 193 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 GMPPAQ96IJ6 420 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-221ENST00000550914 OR10A4Q9H209 315 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 GLIPR2Q9H4G4 154 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 GLRX2Q9NS18 164 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 FLRT3Q9NZU0 649 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 TIMM22Q9Y584 194 aa11.54□□□□□ -0.56
PTCH1-221ENST00000550914 C7orf72A4D263 438 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 KLF4O43474 513 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 SS18L1O75177 396 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-221ENST00000550914 AQP8O94778 261 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 KCNH1O95259 989 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 ANGPTL1O95841 491 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 NGFRP08138 427 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 GCAP28676 217 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 PTH2RP49190 550 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 IMPG1Q17R60 797 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.53□□□□□ -0.56
PTCH1-221ENST00000550914 PRSS53Q2L4Q9 553 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 VPS26BQ4G0F5 336 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 C22orf34Q6ZV56 151 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 PRIMA1Q86XR5 153 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 C17orf53Q8N3J3 647 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-221ENST00000550914 OR5M1Q8NGP8 315 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 ZC3HAV1LQ96H79 300 aaKnown RBP11.53□□□□□ -0.56
PTCH1-221ENST00000550914 ZNF764Q96H86 408 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-221ENST00000550914 KCNA7Q96RP8 456 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 KLHL4Q9C0H6 718 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 GSTO2Q9H4Y5 243 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 MID1IP1Q9NPA3 183 aa11.53□□□□□ -0.56
PTCH1-221ENST00000550914 ZNF701Q9NV72 531 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-221ENST00000550914 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.53□□□□□ -0.56
PTCH1-221ENST00000550914 CHD3Q12873 2000 aaKnown RBP11.53□□□□□ -0.56
PTCH1-221ENST00000550914 PLCE1Q9P212 2302 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 NUP214P35658 2090 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 TRIM64A6NGJ6 449 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 TRIM64BA6NI03 449 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 ALG1L2C9J202 215 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 SMAD7O15105 426 aaKnown RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 ADAMDEC1O15204 470 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 RSL1D1O76021 490 aaKnown RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 CNOT4O95628 575 aaKnown RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 PLGP00747 810 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 THBDP07204 575 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 LCN1P31025 176 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 GABRA3P34903 492 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 MAP3K8P41279 467 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 EIF1AXP47813 144 aaKnown RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 CTBP2P56545 445 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 PPP2R2BQ00005 443 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 GRAMD1BQ3KR37 738 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 NOXRED1Q6NXP6 359 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 APOOLQ6UXV4 268 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 STAC2Q6ZMT1 411 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 BEND4Q6ZU67 534 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 TRMT10CQ7L0Y3 403 aaKnown RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 WDR75Q8IWA0 830 aaKnown RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 GTPBP8Q8N3Z3 284 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-221ENST00000550914 MNS1Q8NEH6 495 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 CDC26Q8NHZ8 85 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 ACTRT2Q8TDY3 377 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 TMEM171Q8WVE6 324 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 ZBTB8AQ96BR9 441 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 ADGRG7Q96K78 797 aa11.52□□□□□ -0.57
PTCH1-221ENST00000550914 PRRG4Q9BZD6 226 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms