RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 C3orf14Q9HBI5 128 aa11.56□□□□□ -0.56
PTCH1-218ENST00000548945 MYNNQ9NPC7 610 aa11.56□□□□□ -0.56
PTCH1-218ENST00000548945 MIEF1Q9NQG6 463 aa11.56□□□□□ -0.56
PTCH1-218ENST00000548945 PAQR5Q9NXK6 330 aaPredicted RBP11.56□□□□□ -0.56
PTCH1-218ENST00000548945 TMEM216Q9P0N5 145 aa11.56□□□□□ -0.56
PTCH1-218ENST00000548945 PROCRQ9UNN8 238 aa11.56□□□□□ -0.56
PTCH1-218ENST00000548945 FBN1P35555 2871 aaKnown RBP11.55□□□□□ -0.56
PTCH1-218ENST00000548945 EXOC1LA0A1B0GW35 172 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 H0YC42 278 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 H3BML4 177 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 H3BQF6 201 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 UPK1AO00322 258 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 SEC14L5O43304 696 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 JUNP05412 331 aaKnown RBP11.55□□□□□ -0.56
PTCH1-218ENST00000548945 GSTA1P08263 222 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 ZNF17P17021 662 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 IL11P20809 199 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 ECHS1P30084 290 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 NTSP30990 170 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 TPD52P55327 224 aaPredicted RBP11.55□□□□□ -0.56
PTCH1-218ENST00000548945 CLDN20P56880 219 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 NAA20P61599 178 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 PRR5P85299 388 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 C2orf80Q0P641 193 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 STX5Q13190 355 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 BEX5Q5H9J7 111 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 SH2D4BQ5SQS7 431 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 FAM71E1Q6IPT2 247 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 TMEM107Q6UX40 140 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 IKBIPQ70UQ0 350 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 CIARTQ8N365 385 aaPredicted RBP11.55□□□□□ -0.56
PTCH1-218ENST00000548945 OR6K3Q8NGY3 331 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 DUSP19Q8WTR2 217 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 IGFBPL1Q8WX77 278 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 ELP4Q96EB1 424 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 METTL2AQ96IZ6 378 aaKnown RBP11.55□□□□□ -0.56
PTCH1-218ENST00000548945 AMDHD1Q96NU7 426 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 HS3ST6Q96QI5 342 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 EBPLQ9BY08 206 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 TBL1XR1Q9BZK7 514 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 RTN4RQ9BZR6 473 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 FANCFQ9NPI8 374 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 PLSCR4Q9NRQ2 329 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 DDX18Q9NVP1 670 aaKnown RBP11.55□□□□□ -0.56
PTCH1-218ENST00000548945 EMC9Q9Y3B6 208 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 FREM1Q5H8C1 2179 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 ABCA1O95477 2261 aa11.55□□□□□ -0.56
PTCH1-218ENST00000548945 CADP27708 2225 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 A0A087WZY1 265 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 UTS2O95399 124 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 ABHD2P08910 425 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 NR1H2P55055 460 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 BTKQ06187 659 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 SGCBQ16585 318 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 SPDYAQ5MJ70 313 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 EMBQ6PCB8 327 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 SH2D5Q6ZV89 423 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 PLEKHM3Q6ZWE6 761 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 ZNF550Q7Z398 422 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 TRIM46Q7Z4K8 759 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 MARCH3Q86UD3 253 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 GGNQ86UU5 652 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 ACMSDQ8TDX5 336 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 HOXB13Q92826 284 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-218ENST00000548945 CCDC126Q96EE4 140 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 PERPQ96FX8 193 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 GMPPAQ96IJ6 420 aaPredicted RBP11.54□□□□□ -0.56
PTCH1-218ENST00000548945 OR10A4Q9H209 315 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 GLIPR2Q9H4G4 154 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 GLRX2Q9NS18 164 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 FLRT3Q9NZU0 649 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 TIMM22Q9Y584 194 aa11.54□□□□□ -0.56
PTCH1-218ENST00000548945 C7orf72A4D263 438 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 KLF4O43474 513 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 SS18L1O75177 396 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-218ENST00000548945 AQP8O94778 261 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 KCNH1O95259 989 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 ANGPTL1O95841 491 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 NGFRP08138 427 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 GCAP28676 217 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 PTH2RP49190 550 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 IMPG1Q17R60 797 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.53□□□□□ -0.56
PTCH1-218ENST00000548945 PRSS53Q2L4Q9 553 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 VPS26BQ4G0F5 336 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 C22orf34Q6ZV56 151 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 PRIMA1Q86XR5 153 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 GSPT2Q8IYD1 628 aaKnown RBP11.53□□□□□ -0.56
PTCH1-218ENST00000548945 OR5M1Q8NGP8 315 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 AENQ8WTP8 325 aaKnown RBP11.53□□□□□ -0.56
PTCH1-218ENST00000548945 ZC3HAV1LQ96H79 300 aaKnown RBP11.53□□□□□ -0.56
PTCH1-218ENST00000548945 ZNF764Q96H86 408 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-218ENST00000548945 KCNA7Q96RP8 456 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 KLHL4Q9C0H6 718 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 GSTO2Q9H4Y5 243 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 MID1IP1Q9NPA3 183 aa11.53□□□□□ -0.56
PTCH1-218ENST00000548945 ZNF701Q9NV72 531 aaPredicted RBP11.53□□□□□ -0.56
PTCH1-218ENST00000548945 CHD3Q12873 2000 aaKnown RBP11.53□□□□□ -0.56
PTCH1-218ENST00000548945 PLCE1Q9P212 2302 aa11.52□□□□□ -0.57
PTCH1-218ENST00000548945 NUP214P35658 2090 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms