RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 IGFBP1P08833 259 aaPredicted RBP5.15□□□□□ -1.58
LIMA1-203ENST00000547825 OR12D1P0DN82 309 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 CBLP22681 906 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 GABRR2P28476 465 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 OR12D2P58182 307 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 ERVK-25P63136 954 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 NFATC2Q13469 925 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 DOC2AQ14183 400 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 TAF13Q15543 124 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 RAB30Q15771 203 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 BAK1Q16611 211 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 SPATS1Q496A3 300 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 PM20D1Q6GTS8 502 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 FRMPD2BQ6IN97 320 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 SLC30A6Q6NXT4 461 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 NCEH1Q6PIU2 408 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 Q7L0L9 218 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 SLC46A3Q7Z3Q1 461 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 GPR149Q86SP6 731 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 TSPAN33Q86UF1 283 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 PLCZ1Q86YW0 608 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 C10orf111Q8N326 155 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF615Q8N8J6 731 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 SPERTQ8NA61 448 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 POGLUT1Q8NBL1 392 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 MDGA1Q8NFP4 955 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 OR52P1PQ8NH57 321 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 OR4C6Q8NH72 309 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 CIDECQ96AQ7 238 aaPredicted RBP5.15□□□□□ -1.58
LIMA1-203ENST00000547825 CMTM7Q96FZ5 175 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 PIP5K1AQ99755 562 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 LINC00597Q9H2U6 94 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 FAM120CQ9NX05 1096 aaKnown RBP5.15□□□□□ -1.58
LIMA1-203ENST00000547825 CNIH4Q9P003 139 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 PLEKHA6Q9Y2H5 1048 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 PLXNB3Q9ULL4 1909 aa5.15□□□□□ -1.58
LIMA1-203ENST00000547825 TCRBV5S2A0A599 114 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CLDN24A6NM45 220 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 DISC1C4P0D8 188 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 E2F3O00716 465 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 SOX30O94993 753 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 RAB36O95755 333 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 H2AFB2P0C5Z0 115 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 MSL3P1P0C860 447 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 RPL3P39023 403 aaKnown RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 P2RX3P56373 397 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 SCAPQ12770 1279 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 KEAP1Q14145 624 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 TMEM95Q3KNT9 176 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 REEP3Q6NUK4 255 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 HAGHLQ6PII5 290 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 GALNT7Q86SF2 657 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF280BQ86YH2 543 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 UMODL1-AS1Q8N2C9 162 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CYB561A3Q8NBI2 242 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 DENND6BQ8NEG7 585 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 GRHL3Q8TE85 626 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CASTOR1Q8WTX7 329 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CPNE2Q96FN4 548 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 ZC3H10Q96K80 434 aaKnown RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 C7orf34Q96L11 122 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 IL17FQ96PD4 163 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 TSNAXQ99598 290 aaKnown RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 DOK1Q99704 481 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 GON7Q9BXV9 100 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 ELL3Q9HB65 397 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CD93Q9NPY3 652 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 VNN3Q9NY84 501 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 TAS2R10Q9NYW0 307 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 DPP7Q9UHL4 492 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF225Q9UK10 706 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CSNK1G3Q9Y6M4 447 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 C13orf42A0A1B0GVH6 325 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 A0A1B0GVT2 93 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 OR2AT4A6NND4 320 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF705EA8MWA4 302 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 TMEM189-UBE2V1I3L0A0 370 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 KCNE1P15382 129 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 LHCGRP22888 699 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 THBS2P35442 1172 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CD96P40200 585 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 NAA10P41227 235 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 GPR4P46093 362 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 STK19P49842 368 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 NCBP2P52298 156 aaKnown RBP eCLIP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 HK3P52790 923 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CRISP3P54108 245 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 PPP3R1P63098 170 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 PRKCDQ05655 676 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 EGR3Q06889 387 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 BIKQ13323 160 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 LARS2Q15031 903 aaKnown RBP5.15□□□□□ -1.59
LIMA1-203ENST00000547825 HSD17B12Q53GQ0 312 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 CCDC157Q569K6 752 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 GPRC6AQ5T6X5 926 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 TXNDC8Q6A555 127 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 FCRLBQ6BAA4 426 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 PLBD1Q6P4A8 553 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 XKRXQ6PP77 449 aa5.15□□□□□ -1.59
LIMA1-203ENST00000547825 ZNF782Q6ZMW2 699 aaPredicted RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms