RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CDYL2Q8N8U2 506 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 TMEM158Q8WZ71 300 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 FBXW5Q969U6 566 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 S100PBPQ96BU1 408 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 TRMT61AQ96FX7 289 aaKnown RBP15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 APIPQ96GX9 242 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 ACPTQ9BZG2 426 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 GIMAP4Q9NUV9 329 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 C19orf53Q9UNZ5 99 aaPredicted RBP15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 RNF115Q9Y4L5 304 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 NBEAL1Q6ZS30 2694 aa15.9■□□□□ 0.14
CLSTN3-214ENST00000542663 UQCRHLA0A096LP55 91 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 UPK1AO00322 258 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 CXCL13O43927 109 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 COQ9O75208 318 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 GCM2O75603 506 aaPredicted RBP15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 ANGPTL1O95841 491 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 OPN1LWP04000 364 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 JUNP05412 331 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 PSMA4P25789 261 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 AGTR1P30556 359 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 HSD17B3P37058 310 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 HTR6P50406 440 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 PRR5P85299 388 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 HEPACAMQ14CZ8 416 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 NCMAPQ5T1S8 102 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 ALKBH2Q6NS38 261 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 TMEM107Q6UX40 140 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 GALNT10Q86SR1 603 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 ATG4DQ86TL0 474 aaPredicted RBP15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 C12orf49Q9H741 205 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 DMGDHQ9UI17 866 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 LIPT1Q9Y234 373 aa15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 UTP11Q9Y3A2 253 aaKnown RBP15.89■□□□□ 0.13
CLSTN3-214ENST00000542663 ALPK2Q86TB3 2170 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 ADAMDEC1O15204 470 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 ADAM11O75078 769 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 UTS2O95399 124 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 IGKV1D-16P01601 117 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 ZNF17P17021 662 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 TIA1P31483 386 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 RFX3P48380 749 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 CLCQ05315 142 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 C17orf67Q0P5P2 114 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 TSC22D1Q15714 1073 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 TSNAXIP1Q2TAA8 658 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 PGGHGQ32M88 737 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 GRAMD1BQ3KR37 738 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 GALNT18Q6P9A2 607 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 SEZ6L2Q6UXD5 910 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 OR2L13Q8N349 312 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 SMAP2Q8WU79 429 aaPredicted RBP15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 SLC9A6Q92581 669 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 ZBED6CLQ96FA7 236 aaPredicted RBP15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 BBS4Q96RK4 519 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 MRPL57Q9BQC6 102 aaKnown RBP15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 EBPLQ9BY08 206 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 ACSS3Q9H6R3 686 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 Q9N2J8 555 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 FANCFQ9NPI8 374 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 GLRX2Q9NS18 164 aa15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 MCTS1Q9ULC4 181 aaKnown RBP15.88■□□□□ 0.13
CLSTN3-214ENST00000542663 A0A0J9YW62 118 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 TNFSF11O14788 317 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 CLOCKO15516 846 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 PHF1O43189 567 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 KRT6AP02538 564 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 KRT6BP04259 564 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 KRT6CP48668 564 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 CLK3P49761 638 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 NCBP2P52298 156 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 ACSM2AQ08AH3 577 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 CHRFAM7AQ494W8 412 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 ZNF672Q499Z4 452 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 SPIN4Q56A73 249 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 ACSM2BQ68CK6 577 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 STK32CQ86UX6 486 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 WDR75Q8IWA0 830 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 GABRG1Q8N1C3 465 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 GTPBP8Q8N3Z3 284 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 STEAP2Q8NFT2 490 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 GTPBP3Q969Y2 492 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 TACO1Q9BSH4 297 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 LMF2Q9BU23 707 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 TBL1XR1Q9BZK7 514 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 SHCBP1LQ9BZQ2 653 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 MRPL46Q9H2W6 279 aaKnown RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 PAQR5Q9NXK6 330 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 STOML1Q9UBI4 398 aa15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 GDF2Q9UK05 429 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-214ENST00000542663 GXYLT2A0PJZ3 443 aa15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 A8MV72 311 aaPredicted RBP15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 GPRIN2O60269 458 aa15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 NTN1O95631 604 aa15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 F12P00748 615 aaPredicted RBP15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 CD8AP01732 235 aa15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 TUBBP07437 444 aa15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 CD3EP07766 207 aa15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 COL6A2P12110 1019 aa15.86■□□□□ 0.13
CLSTN3-214ENST00000542663 DDCP20711 480 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms