RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 UBQLN4Q9NRR5 601 aa20.7■□□□□ 0.9
SFSWAP-204ENST00000535399 CCDC167Q9P0B6 97 aa20.7■□□□□ 0.9
SFSWAP-204ENST00000535399 SH3BGRL2Q9UJC5 107 aa20.7■□□□□ 0.9
SFSWAP-204ENST00000535399 OR14I1A6ND48 311 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 NPIPA2E9PIF3 369 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 NPIPA3F8WFD2 350 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 PRRG2O14669 202 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 ZCCHC18P0CG32 403 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 OR12D1P0DN82 309 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 NCF2P19878 526 aaPredicted RBP20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 CLK3P49761 638 aaKnown RBP20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 GTDC1Q4AE62 458 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 METTL21CQ5VZV1 264 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 HEPHL1Q6MZM0 1159 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 SLC2A7Q6PXP3 512 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 RNF130Q86XS8 419 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 FAM83FQ8NEG4 500 aaPredicted RBP20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 OR2M3Q8NG83 312 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 GTF2H4Q92759 462 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 SPDL1Q96EA4 605 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 SDF2Q99470 211 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 TBL1XR1Q9BZK7 514 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 OR2B2Q9GZK3 357 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 EXO5Q9H790 373 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 SDHAF3Q9NRP4 125 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 PPP4R1LQ9P1A2 415 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 TNFRSF10DQ9UBN6 386 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 TRIM33Q9UPN9 1127 aa20.69■□□□□ 0.9
SFSWAP-204ENST00000535399 IGLV3-32A0A0A0MS00 114 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 WIPF3A6NGB9 483 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 NPIPB9F8W1W9 429 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 NR5A2O00482 541 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 AK1P00568 194 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 LDLRP01130 860 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 TPOP07202 933 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 CAPN3P20807 821 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 ATP6V1C1P21283 382 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 KHKP50053 298 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 STX5Q13190 355 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 TOMM20Q15388 145 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 EMC4Q5J8M3 183 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 YRDCQ86U90 279 aaKnown RBP20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 CD163Q86VB7 1156 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 ZFP90Q8TF47 636 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 DUSP19Q8WTR2 217 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 SSC4DQ8WTU2 575 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 XAGE5Q8WWM1 108 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 RAB8BQ92930 207 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 PAIP1Q9H074 479 aaKnown RBP20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 RABEP2Q9H5N1 569 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 DNAJC13O75165 2243 aa20.68■□□□□ 0.9
SFSWAP-204ENST00000535399 NPIPA5A0A0B4J1W7 369 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 NPIPA7E9PJI5 369 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 CCL21O00585 134 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 ANGPTL1O95841 491 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 AGR2O95994 175 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 NPIPA8P0DM63 369 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 SRD5A2P31213 254 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 ARFIP2P53365 341 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 SF3A3Q12874 501 aaKnown RBP eCLIP20.67■□□□□ 0.91e-12■■■□□ 18.1
SFSWAP-204ENST00000535399 ARHGAP11BQ3KRB8 267 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 WIPI1Q5MNZ9 446 aaPredicted RBP20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 COX20Q5RI15 118 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 C6orf10Q5SRN2 563 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 OR4K17Q8NGC6 315 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 SARAFQ96BY9 339 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 DSN1Q9H410 356 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 EXD2Q9NVH0 621 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 MED11Q9P086 117 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 SLC6A5Q9Y345 797 aa20.67■□□□□ 0.9
SFSWAP-204ENST00000535399 A0A1W2PQD3 144 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 PRAMEF27A3QJZ7 478 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 BCKDKO14874 412 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 KRT75O95678 551 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 HOXB9P17482 250 aaPredicted RBP20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 DCTP40126 519 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 MVDP53602 400 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 TXNL4AP83876 142 aaKnown RBP20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 C17orf67Q0P5P2 114 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 FUT5Q11128 374 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 GXYLT1Q4G148 440 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 FLYWCH1Q4VC44 716 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 KLHL26Q53HC5 615 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 ATAD3BQ5T9A4 648 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 OLIG3Q7RTU3 272 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 GATSQ8NAP1 163 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 OR5M9Q8NGP3 310 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 PNPT1Q8TCS8 783 aaKnown RBP20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 ZNF350Q9GZX5 532 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 HOXD1Q9GZZ0 328 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 PNPLA3Q9NST1 481 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 MEMO1Q9Y316 297 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 MRPS18CQ9Y3D5 142 aaKnown RBP20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 NCKAP5O14513 1909 aa20.66■□□□□ 0.9
SFSWAP-204ENST00000535399 DOPEY1Q5JWR5 2465 aa20.65■□□□□ 0.9
SFSWAP-204ENST00000535399 A0A096LPI6 279 aa20.65■□□□□ 0.9
SFSWAP-204ENST00000535399 HMGN4O00479 90 aa20.65■□□□□ 0.9
SFSWAP-204ENST00000535399 SCDO00767 359 aa20.65■□□□□ 0.9
SFSWAP-204ENST00000535399 NDUFB5O43674 189 aa20.65■□□□□ 0.9
SFSWAP-204ENST00000535399 ZIC3O60481 467 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms