RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 G6PC3Q9BUM1 346 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 PRDM14Q9GZV8 571 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 TP63Q9H3D4 680 aaPredicted RBP11.8□□□□□ -0.52
VPS28-216ENST00000533806 LDAHQ9H6V9 325 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 MED4Q9NPJ6 270 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 UBQLN4Q9NRR5 601 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 SLC6A13Q9NSD5 602 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 PCDHGB4Q9UN71 923 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 FAM215AQ9Y5M1 114 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 NCKAP5O14513 1909 aa11.8□□□□□ -0.52
VPS28-216ENST00000533806 ADGRG4Q8IZF6 3080 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 ICE1Q9Y2F5 2266 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 A0A1W2PQD3 144 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 FAM234BA2RU67 622 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 DUXAA6NLW8 204 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 SCO2O43819 266 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 CPSF4O95639 269 aaKnown RBP11.79□□□□□ -0.52
VPS28-216ENST00000533806 ANGPTL1O95841 491 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 GUSBP08236 651 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 ZCCHC18P0CG32 403 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 BMP7P18075 431 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 MATN1P21941 496 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 ACVR2AP27037 513 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 SRD5A2P31213 254 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 SOAT1P35610 550 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 RFX3P48380 749 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 POLR2JP52435 117 aaKnown RBP11.79□□□□□ -0.52
VPS28-216ENST00000533806 MVDP53602 400 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 DSCR4P56555 118 aaPredicted RBP11.79□□□□□ -0.52
VPS28-216ENST00000533806 B3GALT5-AS1P59052 145 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 C17orf67Q0P5P2 114 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 GTF3C1Q12789 2109 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 KLHL26Q53HC5 615 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 DCST1Q5T197 706 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 DCST2Q5T1A1 773 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 MSANTD1Q6ZTZ1 278 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 YRDCQ86U90 279 aaKnown RBP11.79□□□□□ -0.52
VPS28-216ENST00000533806 MIER2Q8N344 545 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 OR5D16Q8NGK9 328 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 OR5M9Q8NGP3 310 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 JADE3Q92613 823 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 SDF2Q99470 211 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 ZBTB18Q99592 522 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 UGT2B28Q9BY64 529 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 ZNF385DQ9H6B1 395 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 SDHAF3Q9NRP4 125 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 TMEM45AQ9NWC5 275 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 SUCOQ9UBS9 1254 aaKnown RBP11.79□□□□□ -0.52
VPS28-216ENST00000533806 PLEKHB1Q9UF11 243 aaPredicted RBP11.79□□□□□ -0.52
VPS28-216ENST00000533806 ACAD8Q9UKU7 415 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 SLC6A5Q9Y345 797 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 DNAJC13O75165 2243 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 DIDO1Q9BTC0 2240 aaKnown RBP11.79□□□□□ -0.52
VPS28-216ENST00000533806 NBPF19A0A087WUL8 3843 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 CELSR2Q9HCU4 2923 aa11.79□□□□□ -0.52
VPS28-216ENST00000533806 PRAMEF27A3QJZ7 478 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 CCDC154A6NI56 674 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 POLR3GO15318 223 aaPredicted RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 WDR1O75083 606 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 ACTL6AO96019 429 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 HOXD4P09016 255 aaPredicted RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 ESRRAP11474 423 aaPredicted RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 GP1BBP13224 206 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 CPN1P15169 458 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 CD1EP15812 388 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 HOXB9P17482 250 aaPredicted RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 CLK3P49761 638 aaKnown RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 ATP4BP51164 291 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 IRX1P78414 480 aaPredicted RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 RCAN2Q14206 197 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 CDSNQ15517 529 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 TMEM44Q2T9K0 475 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 ARHGAP11BQ3KRB8 267 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.78□□□□□ -0.52
VPS28-216ENST00000533806 WLSQ5T9L3 541 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 BLOC1S3Q6QNY0 202 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 MAMDC2Q7Z304 686 aaPredicted RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 MRGPRGQ86SM5 289 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 ULK2Q8IYT8 1036 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 ZNF808Q8N4W9 903 aaPredicted RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 RFWD2Q8NHY2 731 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 GTF2H4Q92759 462 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 VPS33AQ96AX1 596 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 WDYHV1Q96HA8 205 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 PANX1Q96RD7 426 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 SLC35A5Q9BS91 424 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 TTYH2Q9BSA4 534 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 TBL1XR1Q9BZK7 514 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 OR51I1Q9H343 314 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 DSN1Q9H410 356 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 CCDC134Q9H6E4 229 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 TAS2R10Q9NYW0 307 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 MED11Q9P086 117 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 PPP4R1LQ9P1A2 415 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 KCNE5Q9UJ90 142 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 NUP214P35658 2090 aaPredicted RBP11.78□□□□□ -0.52
VPS28-216ENST00000533806 MYO7BQ6PIF6 2116 aa11.78□□□□□ -0.52
VPS28-216ENST00000533806 C15orf38-AP3S2A0A0A6YYH1 394 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 FIGNL2A6NMB9 653 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 FCMRO60667 390 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms