RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 COX18Q8N8Q8 333 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 OR5AK3PQ8NH89 298 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 LILRB4Q8NHJ6 448 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 GOT1L1Q8NHS2 421 aaPredicted RBP9.27□□□□□ -0.93
VPS28-204ENST00000526054 FBXO30Q8TB52 745 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 SPPL2AQ8TCT8 520 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 GPR151Q8TDV0 419 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 ADAMTS15Q8TE58 950 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 PAQR8Q8TEZ7 354 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 DIO2Q92813 273 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 HOXB13Q92826 284 aaPredicted RBP9.27□□□□□ -0.93
VPS28-204ENST00000526054 TMCO6Q96DC7 493 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 SLC35A4Q96G79 324 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 COL21A1Q96P44 957 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 STACQ99469 402 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 FAM173AQ9BQD7 235 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 ZNF559Q9BR84 538 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 SLC35A5Q9BS91 424 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 UCK2Q9BZX2 261 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 FAM107BQ9H098 131 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 SH2D2AQ9NP31 389 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 PNPLA3Q9NST1 481 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 CCDC167Q9P0B6 97 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 LIPGQ9Y5X9 500 aa9.27□□□□□ -0.93
VPS28-204ENST00000526054 CHCHD2Q9Y6H1 151 aaPredicted RBP9.27□□□□□ -0.93
VPS28-204ENST00000526054 NDUFAB1O14561 156 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 TSPAN2O60636 221 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 UGT2B11O75310 529 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 GLSO94925 669 aaPredicted RBP9.26□□□□□ -0.93
VPS28-204ENST00000526054 ANP32DO95626 131 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 IGHG3P01860 377 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 CNR1P21554 472 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 ACVR2AP27037 513 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 PIGAP37287 484 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 MAP3K8P41279 467 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 MAGEA5P43359 124 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 ZFP36L2P47974 494 aaKnown RBP9.26□□□□□ -0.93
VPS28-204ENST00000526054 RFX3P48380 749 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 DNASE1L1P49184 302 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 ANXA11P50995 505 aaKnown RBP9.26□□□□□ -0.93
VPS28-204ENST00000526054 PNLIPRP2P54317 469 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 KCNJ2P63252 427 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 SF3A3Q12874 501 aaKnown RBP eCLIP9.26□□□□□ -0.933e-6■■■■□ 25.6
VPS28-204ENST00000526054 MYBPHQ13203 477 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 GAB1Q13480 694 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 DUSP5Q16690 384 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 GXYLT1Q4G148 440 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 C6orf10Q5SRN2 563 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 PRAMEF20Q5VT98 475 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 ZNF585AQ6P3V2 769 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 BLOC1S3Q6QNY0 202 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 DNAJC14Q6Y2X3 702 aaPredicted RBP9.26□□□□□ -0.93
VPS28-204ENST00000526054 B3GNT6Q6ZMB0 384 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 C6orf120Q7Z4R8 191 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 SPATA21Q7Z572 469 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 TMEM251Q8N6I4 163 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 SLC16A11Q8NCK7 471 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 OR4N2Q8NGD1 307 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 OR5M9Q8NGP3 310 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 OR10Q1Q8NGQ4 319 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 BCAS4Q8TDM0 211 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 C10orf82Q8WW14 230 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 HGDQ93099 445 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 VPS33AQ96AX1 596 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 EFHD2Q96C19 240 aaPredicted RBP9.26□□□□□ -0.93
VPS28-204ENST00000526054 SPDL1Q96EA4 605 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 RMND5BQ96G75 393 aaPredicted RBP9.26□□□□□ -0.93
VPS28-204ENST00000526054 C16orf58Q96GQ5 468 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 CCT8L2Q96SF2 557 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 ADOQ96SZ5 270 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 YIPF4Q9BSR8 244 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 INPP5KQ9BT40 448 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 PIGUQ9H490 435 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 ZNF385DQ9H6B1 395 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 METTL7AQ9H8H3 244 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 IL1RL2Q9HB29 575 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 DUSP22Q9NRW4 184 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 GPATCH2Q9NW75 528 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 GIN1Q9NXP7 522 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 KLRF1Q9NZS2 232 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 CNOT11Q9UKZ1 510 aaKnown RBP9.26□□□□□ -0.93
VPS28-204ENST00000526054 BOKQ9UMX3 212 aaPredicted RBP9.26□□□□□ -0.93
VPS28-204ENST00000526054 PCDHGB3Q9Y5G1 929 aa9.26□□□□□ -0.93
VPS28-204ENST00000526054 GXYLT2A0PJZ3 443 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 ANKRD33BA6NCL7 494 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 PRAMEF25A6NGN4 478 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 DUXAA6NLW8 204 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 AQP7O14520 342 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 SNX4O95219 450 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 KRT75O95678 551 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 IL33O95760 270 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 AGR2O95994 175 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 AK1P00568 194 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 CELA3AP09093 270 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 MATN1P21941 496 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 MASP1P48740 699 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 TRPC1P48995 793 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 MAN2A2P49641 1150 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 KHKP50053 298 aa9.25□□□□□ -0.93
VPS28-204ENST00000526054 POU6F2P78424 691 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms