RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TMEM110Q86TL2 294 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 FAM131BQ86XD5 332 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 ZDHHC21Q8IVQ6 265 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.17□□□□□ -1.42
LSM1-202ENST00000520286 HPDLQ96IR7 371 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 NSMCE3Q96MG7 304 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 TTC25Q96NG3 672 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 DUX3Q96PT4 197 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 TBCDQ9BTW9 1192 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 CALHM2Q9HA72 323 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 DEPPQ9NTK1 212 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 AGPAT5Q9NUQ2 364 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 RBM28Q9NW13 759 aaKnown RBP6.17□□□□□ -1.42
LSM1-202ENST00000520286 XPO7Q9UIA9 1087 aaKnown RBP6.17□□□□□ -1.42
LSM1-202ENST00000520286 B9D1Q9UPM9 204 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 SF3B1O75533 1304 aaKnown RBP eCLIP6.17□□□□□ -1.428e-6■■■■■ 107
LSM1-202ENST00000520286 C5P01031 1676 aa6.17□□□□□ -1.42
LSM1-202ENST00000520286 ALOX15BO15296 676 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 TBX19O60806 448 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 OAS1P00973 400 aaKnown RBP6.16□□□□□ -1.42
LSM1-202ENST00000520286 SERPINB2P05120 415 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 CLUP10909 449 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 ATP6V1C1P21283 382 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 CHMLP26374 656 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 TMEM50BP56557 158 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 CCDC57Q2TAC2 916 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 MOGAT2Q3SYC2 334 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 ATRAIDQ6UW56 229 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 GDPGP1Q6ZNW5 385 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 CENPUQ71F23 418 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 ZFAND4Q86XD8 727 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 NFAM1Q8NET5 270 aaPredicted RBP6.16□□□□□ -1.42
LSM1-202ENST00000520286 POLR1EQ9GZS1 481 aaKnown RBP6.16□□□□□ -1.42
LSM1-202ENST00000520286 FAM107BQ9H098 131 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 LPAR2Q9HBW0 351 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 TAS2R16Q9NYV7 291 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 THYN1Q9P016 225 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 EXTL2Q9UBQ6 330 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 GHRLQ9UBU3 117 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 PURGQ9UJV8 347 aaKnown RBP6.16□□□□□ -1.42
LSM1-202ENST00000520286 EMCNQ9ULC0 261 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 GAB2Q9UQC2 676 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 EXOGQ9Y2C4 368 aaKnown RBP6.16□□□□□ -1.42
LSM1-202ENST00000520286 A0A1W2PP64 1363 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 KDRP35968 1356 aa6.16□□□□□ -1.42
LSM1-202ENST00000520286 KIF13BQ9NQT8 1826 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 FAM208AQ9UK61 1670 aaKnown RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 SYNJ2BP-COX16A0A087WUM0 186 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 CLRN2A0PK11 232 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 KRTAP29-1A8MX34 341 aaPredicted RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 K7ERI5 159 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 IMPA2O14732 288 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 XPO1O14980 1071 aaKnown RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 ZNF821O75541 412 aaPredicted RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 CSF2P04141 144 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 OR9G9P0C7N8 305 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 CFC1BP0CG36 223 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 CFC1P0CG37 223 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 FOSL2P15408 326 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 CALML3P27482 149 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 CYLC1P35663 651 aaPredicted RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 TDO2P48775 406 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 GBX2P52951 348 aaPredicted RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 ZP4Q12836 540 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 BEND6Q5SZJ8 279 aaPredicted RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 AGAP7PQ5VUJ5 663 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 CST9Q5W186 159 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 WDR25Q64LD2 544 aaPredicted RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 USP43Q70EL4 1123 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 NET1Q7Z628 596 aaPredicted RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 CARM1Q86X55 608 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 ZNF614Q8N883 585 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 ZNF781Q8N8C0 355 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 AQP11Q8NBQ7 271 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 OR4F17Q8NGA8 305 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 DLX4Q92988 240 aaPredicted RBP6.15□□□□□ -1.42
LSM1-202ENST00000520286 ART5Q96L15 291 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 AGAP4Q96P64 663 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 OR4F4Q96R69 305 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 LGMNQ99538 433 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 GPR174Q9BXC1 333 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 GSDMCQ9BYG8 508 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 STRADBQ9C0K7 418 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 PARLQ9H300 379 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 LIME1Q9H400 295 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 C1orf123Q9NWV4 160 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 DOT1LQ8TEK3 1739 aa6.15□□□□□ -1.42
LSM1-202ENST00000520286 TNRC6CQ9HCJ0 1690 aaKnown RBP6.14□□□□□ -1.43
LSM1-202ENST00000520286 UBR3Q6ZT12 1888 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 NPIPA5A0A0B4J1W7 369 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 NPIPA5E9PKD4 350 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 RIPK2O43353 540 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 RANBP6O60518 1105 aaKnown RBP6.14□□□□□ -1.43
LSM1-202ENST00000520286 TOXO94900 526 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 UQCRBP14927 111 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 EPHX2P34913 555 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 ACTR1AP61163 376 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 BNIP1Q12981 228 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 PDK4Q16654 411 aa6.14□□□□□ -1.43
LSM1-202ENST00000520286 CDKN3Q16667 212 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms