RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ACOT1Q86TX2 421 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CYP4Z1Q86W10 505 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMPRSS12Q86WS5 348 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRIM69Q86WT6 500 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 VRK2Q86Y07 508 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PTOV1Q86YD1 416 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MARCH9Q86YJ5 346 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBM45Q8IUH3 476 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TBC1D10CQ8IV04 446 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM139Q8IV31 216 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CROCCP3Q8IVE0 287 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MMAAQ8IVH4 418 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CDKL3Q8IVW4 592 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAP7D3Q8IWC1 876 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRC8AQ8IWT6 810 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CHERPQ8IWX8 916 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RCOR2Q8IZ40 523 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RNF113BQ8IZP6 322 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OFCC1Q8IZS5 231 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LINC00518Q8N0U6 118 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM123Q8N131 208 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPC2Q8N158 579 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NAGSQ8N159 534 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLEC4FQ8N1N0 589 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ELMOD1Q8N336 334 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FBXL16Q8N461 479 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GBGT1Q8N5D6 347 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLDN19Q8N6F1 224 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ALLCQ8N6M5 410 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C1orf52Q8N6N3 182 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PCDH20Q8N6Y1 951 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCDC185Q8N715 623 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HORMAD2Q8N7B1 307 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF565Q8N9K5 539 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRC57Q8N9N7 239 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNX31Q8N9S9 440 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF485Q8NCK3 441 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NPEPL1Q8NDH3 523 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ICA1LQ8NDH6 482 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM104Q8NE00 496 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NFAM1Q8NET5 270 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DMBX1Q8NFW5 382 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 STXBP6Q8NFX7 210 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5T1Q8NG75 326 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR2L3Q8NG85 312 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR7G1Q8NGA0 311 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR10A7Q8NGE5 316 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR51L1Q8NGJ5 315 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR51G2Q8NGK0 314 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR4D5Q8NGN0 318 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR1L4Q8NGR5 311 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR13C3Q8NGS6 347 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR13C9Q8NGT0 318 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR13J1Q8NGT2 312 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR52I2Q8NH67 350 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5R1Q8NH85 324 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF461Q8TAF7 563 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C8orf46Q8TAG6 207 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RHEBL1Q8TAI7 183 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RDH11Q8TC12 318 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MARCH1Q8TCQ1 289 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR151Q8TDV0 419 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAP25Q8TEE9 199 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SECTM1Q8WVN6 248 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 FCAMRQ8WWV6 532 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASB5Q8WWX0 329 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SORCS1Q8WY21 1168 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARNTL2Q8WYA1 636 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ST8SIA1Q92185 356 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMPDL3AQ92484 453 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKRD7Q92527 254 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 P3H4Q92791 437 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIFAP3Q92845 792 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SEMA4DQ92854 862 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NEUROG1Q92886 237 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 DAZLQ92904 295 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD101Q93033 1021 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 LHX4Q969G2 390 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PIGTQ969N2 578 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TOP1MTQ969P6 601 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERGIC1Q969X5 290 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSACCQ96A04 125 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRGPRFQ96AM1 343 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIAA1143Q96AT1 154 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 EME1Q96AY2 570 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 PHF21AQ96BD5 680 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF707Q96C28 371 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C8orf44Q96CB5 159 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC25A36Q96CQ1 311 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C10orf35Q96D05 121 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 REPS1Q96D71 796 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 BPIFA2Q96DR5 249 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TM4SF19Q96DZ7 209 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 NUS1Q96E22 293 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MRPL53Q96EL3 112 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCRN2Q96FV2 425 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 CERS2Q96G23 380 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF274Q96GC6 653 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF419Q96HQ0 510 aaPredicted RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABHD8Q96I13 439 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms