RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 LRRC49Q8IUZ0 686 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 ABHD12Q8N2K0 398 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 Q8N377 158 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 ZNF671Q8TAW3 534 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 EMG1Q92979 244 aaKnown RBP5.9□□□□□ -1.46
NUP54-215ENST00000514313 SDSLQ96GA7 329 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 CCT7Q99832 543 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 AMBNQ9NP70 447 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 MDFICQ9P1T7 246 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 WDR45Q9Y484 360 aa5.9□□□□□ -1.46
NUP54-215ENST00000514313 METTL21EPA6NDL7 271 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 NUDT21O43809 227 aaKnown RBP5.89□□□□□ -1.47
NUP54-215ENST00000514313 RAMP1O60894 148 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 SURF6O75683 361 aaKnown RBP5.89□□□□□ -1.47
NUP54-215ENST00000514313 SNRPCP09234 159 aaKnown RBP5.89□□□□□ -1.47
NUP54-215ENST00000514313 PVRP15151 417 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 IGFBP5P24593 272 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 PAX8Q06710 450 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 RGS1Q08116 209 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 FCHO2Q0JRZ9 810 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 SYPL1Q16563 259 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 CNPY1Q3B7I2 92 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 GGTA1PQ4G0N0 100 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 ZNF506Q5JVG8 444 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 FAM182AQ5T1J6 154 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 SEL1L3Q68CR1 1132 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 LEMD1Q68G75 181 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 STAC2Q6ZMT1 411 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 LINC01561Q8N1V8 128 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 ZSCAN4Q8NAM6 433 aaPredicted RBP5.89□□□□□ -1.47
NUP54-215ENST00000514313 PIWIL1Q96J94 861 aaKnown RBP5.89□□□□□ -1.47
NUP54-215ENST00000514313 ADNPQ9H2P0 1102 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 HEXA-AS1Q9H8Q6 139 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 APMAPQ9HDC9 416 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 GMPPBQ9Y5P6 360 aa5.89□□□□□ -1.47
NUP54-215ENST00000514313 BTN3A3O00478 584 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 LRRTM2O43300 516 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 F10P00742 488 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 IL1BP01584 269 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 MELTFP08582 738 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 RPS2P15880 293 aaKnown RBP5.88□□□□□ -1.47
NUP54-215ENST00000514313 TAGLN2P37802 199 aaKnown RBP5.88□□□□□ -1.47
NUP54-215ENST00000514313 ERVK11-1P61568 191 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 PEX6Q13608 980 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 ABRAXAS2Q15018 415 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 BOLA3Q53S33 107 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 TIPARPQ7Z3E1 657 aaKnown RBP5.88□□□□□ -1.47
NUP54-215ENST00000514313 ACOT1Q86TX2 421 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 BPIFB2Q8N4F0 458 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 SYT14Q8NB59 555 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 SLC41A3Q96GZ6 507 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 ZBTB18Q99592 522 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 TRIM51Q9BSJ1 452 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 GON7Q9BXV9 100 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 DCAF16Q9NXF7 216 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 C6orf203Q9P0P8 240 aaPredicted RBP5.88□□□□□ -1.47
NUP54-215ENST00000514313 CRLS1Q9UJA2 301 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 PTBP2Q9UKA9 531 aaKnown RBP5.88□□□□□ -1.47
NUP54-215ENST00000514313 NTNG1Q9Y2I2 539 aa5.88□□□□□ -1.47
NUP54-215ENST00000514313 KIF26BQ2KJY2 2108 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 ZNF487B1APH4 448 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 PRRG1O14668 218 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 ARPC3O15145 178 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 PCMT1P22061 227 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 CALB2P22676 271 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 HMGCLP35914 325 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 HPCAL1P37235 193 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 AIF1P55008 147 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 TNFRSF17Q02223 184 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 BDH1Q02338 343 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 RABL6Q3YEC7 729 aaPredicted RBP5.87□□□□□ -1.47
NUP54-215ENST00000514313 LGSNQ5TDP6 509 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 KCNIP4Q6PIL6 250 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 ZNF497Q6ZNH5 498 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 TMUB2Q71RG4 321 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 SLC38A6Q8IZM9 456 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 CLDN19Q8N6F1 224 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 STXBP6Q8NFX7 210 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 OR8J1Q8NGP2 316 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 SH3YL1Q96HL8 342 aaPredicted RBP5.87□□□□□ -1.47
NUP54-215ENST00000514313 AMDHD1Q96NU7 426 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 MAGT1Q9H0U3 335 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 FAM120CQ9NX05 1096 aaKnown RBP5.87□□□□□ -1.47
NUP54-215ENST00000514313 ELOVL2Q9NXB9 296 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 PIPOXQ9P0Z9 390 aa5.87□□□□□ -1.47
NUP54-215ENST00000514313 SHISA9B4DS77 424 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 UBXN8O00124 270 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 RENP00797 406 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 ZNF44P15621 663 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 PGCP20142 388 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 ATP5A1P25705 553 aaKnown RBP5.86□□□□□ -1.47
NUP54-215ENST00000514313 RPL8P62917 257 aaKnown RBP5.86□□□□□ -1.47
NUP54-215ENST00000514313 IL18R1Q13478 541 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 C14orf177Q52M58 125 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 NHLRC3Q5JS37 347 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 TMEM225Q6GV28 225 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 SYT10Q6XYQ8 523 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 IFNEQ86WN2 208 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 UBQLNLQ8IYU4 475 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 TMEM123Q8N131 208 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms