RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 KLF4O43474 513 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 GALR3O60755 368 aaPredicted RBP11.17□□□□□ -0.62
NUP54-202ENST00000502850 APOA1P02647 267 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 CKMT1AP12532 417 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 NT5EP21589 574 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 SOX3P41225 446 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 CDH11P55287 796 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 RAB38P57729 211 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 RPS3AP61247 264 aaKnown RBP11.17□□□□□ -0.62
NUP54-202ENST00000502850 ZXDAP98168 799 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 IFITM3Q01628 133 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 TCEA2Q15560 299 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 PGGHGQ32M88 737 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 DCST2Q5T1A1 773 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 KIAA0895LQ68EN5 471 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 TMEM92Q6UXU6 159 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 HMGN2P46Q86SG4 172 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 CCDC190Q86UF4 302 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 SLC22A16Q86VW1 577 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 PHC2Q8IXK0 858 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 SLC43A2Q8N370 569 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 PARP16Q8N5Y8 322 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 PSD4Q8NDX1 1056 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 OR52L1Q8NGH7 329 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 BRIX1Q8TDN6 353 aaKnown RBP11.17□□□□□ -0.62
NUP54-202ENST00000502850 FAM3CQ92520 227 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 AP3S1Q92572 193 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 GPA33Q99795 319 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 SLC30A2Q9BRI3 323 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 CNPPD1Q9BV87 410 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 JAM3Q9BX67 310 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 PLA2G12AQ9BZM1 189 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 HRASLS2Q9NWW9 162 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 CNIH4Q9P003 139 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 TRAPPC4Q9Y296 219 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 GSTK1Q9Y2Q3 226 aa11.17□□□□□ -0.62
NUP54-202ENST00000502850 GPR55Q9Y2T6 319 aaPredicted RBP11.17□□□□□ -0.62
NUP54-202ENST00000502850 TRBV23OR9-2A0A075B6M9 112 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 OR5K3A6NET4 321 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 SURF4O15260 269 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 TBX1O43435 398 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 FRS3O43559 492 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 FCMRO60667 390 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 ADRA2AP08913 450 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 HBQ1P09105 142 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 CTSEP14091 401 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 TRHRP34981 398 aaPredicted RBP11.16□□□□□ -0.62
NUP54-202ENST00000502850 CRYBB2P43320 205 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 POU6F2P78424 691 aaPredicted RBP11.16□□□□□ -0.62
NUP54-202ENST00000502850 TPBGQ13641 420 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 NXNL2Q5VZ03 156 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 NRMQ8IXM6 262 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 CDK20Q8IZL9 346 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 CLIP4Q8N3C7 705 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 POGLUT1Q8NBL1 392 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 OR8D4Q8NGM9 314 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 SETD6Q8TBK2 473 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 SLC35B4Q969S0 331 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 TMCO6Q96DC7 493 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 WDFY2Q96P53 400 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 NELL2Q99435 816 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 MED18Q9BUE0 208 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 SEMA6CQ9H3T2 930 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 FN3KQ9H479 309 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 RNF167Q9H6Y7 350 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 SYNDIG1Q9H7V2 258 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 IL21RQ9HBE5 538 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 ADAP2Q9NPF8 381 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 H2AFY2Q9P0M6 372 aaPredicted RBP11.16□□□□□ -0.62
NUP54-202ENST00000502850 CHST2Q9Y4C5 530 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 PCDHGB6Q9Y5F9 930 aa11.16□□□□□ -0.62
NUP54-202ENST00000502850 TMEM221A6NGB7 291 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 M0R296 226 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 CYR61O00622 381 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 AKAP8O43823 692 aaKnown RBP11.15□□□□□ -0.62
NUP54-202ENST00000502850 ZIC2O95409 532 aaPredicted RBP11.15□□□□□ -0.62
NUP54-202ENST00000502850 EIF2S1P05198 315 aaKnown RBP11.15□□□□□ -0.62
NUP54-202ENST00000502850 GAAP10253 952 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 GNSP15586 552 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 HTR1FP30939 366 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 GABRA5P31644 462 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 ETV5P41161 510 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 CAPZA2P47755 286 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 ETV1P50549 477 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 SHC2P98077 582 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 ACSM1Q08AH1 577 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 ZNHIT3Q15649 155 aaPredicted RBP11.15□□□□□ -0.62
NUP54-202ENST00000502850 PLK5Q496M5 336 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 SOWAHCQ53LP3 525 aaPredicted RBP11.15□□□□□ -0.62
NUP54-202ENST00000502850 LIPKQ5VXJ0 399 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 BMP8AQ7Z5Y6 402 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 TAF8Q7Z7C8 310 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 CA13Q8N1Q1 262 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 KLHL36Q8N4N3 616 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 POC5Q8NA72 575 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 OR13H1Q8NG92 308 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 SLC37A2Q8TED4 501 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 HMGB4Q8WW32 186 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 ZG16BQ96DA0 208 aa11.15□□□□□ -0.62
NUP54-202ENST00000502850 HS6ST2Q96MM7 605 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms