RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 OSTF1Q92882 214 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 PPP1R14BQ96C90 147 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 SH3YL1Q96HL8 342 aaPredicted RBP9.99□□□□□ -0.81
USP4-214ENST00000491791 PLEKHA8Q96JA3 519 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 MCHR1Q99705 422 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 GPA33Q99795 319 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 CCDC3Q9BQI4 270 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 JAM3Q9BX67 310 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 PRRG3Q9BZD7 231 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 WDR12Q9GZL7 423 aaKnown RBP9.99□□□□□ -0.81
USP4-214ENST00000491791 SLIRPQ9GZT3 109 aaKnown RBP9.99□□□□□ -0.81
USP4-214ENST00000491791 MMP27Q9H306 513 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 OCEL1Q9H607 264 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 ARMC7Q9H6L4 198 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 CACYBPQ9HB71 228 aaKnown RBP9.99□□□□□ -0.81
USP4-214ENST00000491791 PARD6AQ9NPB6 346 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 TBC1D23Q9NUY8 699 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 C14orf105Q9NVL8 296 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 C2orf42Q9NWW7 574 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 NLGN3Q9NZ94 848 aa9.99□□□□□ -0.81
USP4-214ENST00000491791 CCDC59Q9P031 241 aaKnown RBP9.99□□□□□ -0.81
USP4-214ENST00000491791 DIMT1Q9UNQ2 313 aaKnown RBP9.99□□□□□ -0.81
USP4-214ENST00000491791 A0A1B0GVG6 124 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 TRAPPC13A5PLN9 417 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 CDHR4A6H8M9 788 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 EFCAB9A8MZ26 197 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 CLDN25C9JDP6 229 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 H3BN98 237 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 CHST10O43529 356 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 FOXS1O43638 330 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 AIREO43918 545 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 CBX7O95931 251 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 THY1P04216 161 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 PROS1P07225 676 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 ADRB1P08588 477 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 GAAP10253 952 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 DBTP11182 482 aaKnown RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 POU1F1P28069 291 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 TRHRP34981 398 aaPredicted RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 PTGER1P34995 402 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 FNTBP49356 437 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 NUDT6P53370 316 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 C21orf59P57076 290 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 POU6F2P78424 691 aaPredicted RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 SHC2P98077 582 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 ZNF91Q05481 1191 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 RAB40BQ12829 278 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 SYT14P1Q58G82 188 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 ARMCX4Q5H9R4 360 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 C3orf38Q5JPI3 329 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 ACSM5Q6NUN0 579 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 ZNF613Q6PF04 617 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 PRR23CQ6ZRP0 262 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 OLIG3Q7RTU3 272 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 PRSS41Q7RTY9 318 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 PRICKLE2Q7Z3G6 844 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 ARHGAP22Q7Z5H3 698 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 RANBP3LQ86VV4 465 aaPredicted RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 ATCAYQ86WG3 371 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 SFTPA2Q8IWL1 248 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 OR4N5Q8IXE1 308 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 NANOGP1Q8N7R0 232 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 WDR36Q8NI36 951 aaKnown RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 NDNFQ8TB73 568 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 TMEM163Q8TC26 289 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 DNASE2BQ8WZ79 361 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 SLC9A6Q92581 669 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 COL26A1Q96A83 441 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 SLC41A3Q96GZ6 507 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 MGLLQ99685 303 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 PRSS27Q9BQR3 290 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 PELOQ9BRX2 385 aaKnown RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 QRSL1Q9H0R6 528 aaKnown RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 ANKRA2Q9H9E1 313 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 HMG20AQ9NP66 347 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 AMBNQ9NP70 447 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 KRCC1Q9NPI7 259 aaPredicted RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 EQTNQ9NQ60 294 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 TBCCD1Q9NVR7 557 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 SELENONQ9NZV5 590 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 ZNF223Q9UK11 482 aaPredicted RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 PLCL2Q9UPR0 1127 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 MRPS33Q9Y291 106 aaKnown RBP9.98□□□□□ -0.81
USP4-214ENST00000491791 CLDN16Q9Y5I7 305 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 PMF1-BGLAPU3KQ54 211 aa9.98□□□□□ -0.81
USP4-214ENST00000491791 CHD8Q9HCK8 2581 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 TMEM129A0AVI4 362 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 TLCD2A6NGC4 264 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 SLC9B1P1A6NJY1 282 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 NPIPB9F8W1W9 429 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 H0YIG0 161 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 SGK494L7N484 410 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 CCRL2O00421 344 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 PRODHO43272 600 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 ZNF749O43361 778 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 HRO43593 1189 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 HCRTR1O43613 425 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 PRKYO43930 277 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 HMGN1P05114 100 aa9.97□□□□□ -0.81
USP4-214ENST00000491791 EIF2S1P05198 315 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms