RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 OR2B2Q9GZK3 357 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D29Q9UFV1 150 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3DA0A087WVF3 549 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3IA0A087WXS9 549 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3EA0A087X179 549 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3KA0A087X1G2 549 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3FA6NER0 549 aaPredicted RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 CENPXA8MT69 81 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3LB9A6J9 549 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 RNGTTO60942 597 aaKnown RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 APODP05090 189 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3HP0C7X1 549 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 CPN2P22792 545 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 DDOSTP39656 456 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 MRPS15P82914 257 aaKnown RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 ID2Q02363 134 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 PPP2R2DQ66LE6 453 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3GQ6DHY5 549 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3CQ6IPX1 549 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 ZNF836Q6ZNA1 936 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 ZNF620Q6ZNG0 422 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 YAF2Q8IY57 180 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TBC1D3Q8IZP1 549 aaPredicted RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 KLHL36Q8N4N3 616 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 ARIH2OSQ8N7S6 290 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 UBASH3BQ8TF42 649 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 ATF6BQ99941 703 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 KXD1Q9BQD3 176 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TTYH2Q9BSA4 534 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 TEX12Q9BXU0 123 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 MTHFD2LQ9H903 347 aaPredicted RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 MED20Q9H944 212 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 ISG20L2Q9H9L3 353 aaKnown RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 HINT3Q9NQE9 182 aaKnown RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 TMEM74BQ9NUR3 256 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 LYARQ9NX58 379 aaKnown RBP16.75■□□□□ 0.27
VIM-206ENST00000487938 WDR45Q9Y484 360 aa16.75■□□□□ 0.27
VIM-206ENST00000487938 KLF4O43474 513 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 GKN3PP0CG01 181 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 PRG2P13727 222 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 MYL9P24844 172 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 TEAD1P28347 426 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 RACK1P63244 317 aaKnown RBP16.74■□□□□ 0.27
VIM-206ENST00000487938 DUSP5Q16690 384 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 C6orf183Q5T699 404 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 HEPHL1Q6MZM0 1159 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 TMEFF1Q8IYR6 380 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 RDH10Q8IZV5 341 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 LRRC25Q8N386 305 aaPredicted RBP16.74■□□□□ 0.27
VIM-206ENST00000487938 SIRT6Q8N6T7 355 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 OR51G2Q8NGK0 314 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 NEIL3Q8TAT5 605 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 ARSGQ96EG1 525 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 SENP5Q96HI0 755 aaPredicted RBP16.74■□□□□ 0.27
VIM-206ENST00000487938 ANKRD19PQ9H560 264 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 RMI1Q9H9A7 625 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 ZNF232Q9UNY5 417 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 EXOGQ9Y2C4 368 aaKnown RBP16.74■□□□□ 0.27
VIM-206ENST00000487938 COLEC10Q9Y6Z7 277 aa16.74■□□□□ 0.27
VIM-206ENST00000487938 A0A0B4J293 547 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 SLC2A2P11168 524 aaPredicted RBP16.73■□□□□ 0.27
VIM-206ENST00000487938 TSFMP43897 325 aaKnown RBP16.73■□□□□ 0.27
VIM-206ENST00000487938 PPP3R1P63098 170 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 DEFB134Q4QY38 66 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 TRMT12Q53H54 448 aaKnown RBP16.73■□□□□ 0.27
VIM-206ENST00000487938 FBXO42Q6P3S6 717 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 PLBD1Q6P4A8 553 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 SMARCD3Q6STE5 483 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 PAQR7Q86WK9 346 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 VWA5B2Q8N398 1253 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 Q8N402 240 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 OR2T33Q8NG76 320 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 RNF31Q96EP0 1072 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 FYTTD1Q96QD9 318 aaKnown RBP16.73■□□□□ 0.27
VIM-206ENST00000487938 TBX5Q99593 518 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 ENKD1Q9H0I2 346 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 RANGRFQ9HD47 186 aaPredicted RBP16.73■□□□□ 0.27
VIM-206ENST00000487938 NLGN3Q9NZ94 848 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 TNFRSF10DQ9UBN6 386 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 DUXAA6NLW8 204 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 FAM47E-STBD1D6RA91 191 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 NDUFV2P19404 249 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 HTR1FP30939 366 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 RPS5P46782 204 aaKnown RBP16.73■□□□□ 0.27
VIM-206ENST00000487938 GCGRP47871 477 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 ARFIP1P53367 373 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 RUNX2Q13950 521 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 IL18Q14116 193 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 LCN1P1Q5VSP4 162 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 CDC73Q6P1J9 531 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 ASPGQ86U10 573 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 PEX5LQ8IYB4 626 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 CCL4L1Q8NHW4 92 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 FRMD6Q96NE9 622 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 MS4A4EQ96PG1 132 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 DPH1Q9BZG8 443 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 UBQLN3Q9H347 655 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 IGFLR1Q9H665 355 aa16.73■□□□□ 0.27
VIM-206ENST00000487938 TRIM45Q9H8W5 580 aaPredicted RBP16.73■□□□□ 0.27
VIM-206ENST00000487938 RNF121Q9H920 327 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms