RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 BST1Q10588 318 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 LSM12Q3MHD2 195 aaKnown RBP16■□□□□ 0.15
COL6A1-204ENST00000486023 APOOLQ6UXV4 268 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 DMRTC2Q8IXT2 367 aaPredicted RBP16■□□□□ 0.15
COL6A1-204ENST00000486023 CLEC4FQ8N1N0 589 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 C9orf106Q8NAJ2 232 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 OR4C3Q8NH37 302 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 ZPLD1Q8TCW7 415 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 CDS1Q92903 461 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 SORT1Q99523 831 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 ZNF559Q9BR84 538 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 CALHM2Q9HA72 323 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 GIN1Q9NXP7 522 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 NOP53Q9NZM5 478 aaKnown RBP16■□□□□ 0.15
COL6A1-204ENST00000486023 ITGB1BP2Q9UKP3 347 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 FAF1Q9UNN5 650 aaPredicted RBP16■□□□□ 0.15
COL6A1-204ENST00000486023 ACTL7BQ9Y614 415 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 CSMD1Q96PZ7 3565 aa16■□□□□ 0.15
COL6A1-204ENST00000486023 CACNA1CQ13936 2221 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 TMEM120BA0PK00 339 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 CD8B2A6NJW9 211 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 EEF1E1-BLOC1S5C9J1V9 151 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 H3BML4 177 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 SEC14L5O43304 696 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 EEF1E1O43324 174 aaKnown RBP15.99■□□□□ 0.15
COL6A1-204ENST00000486023 NDUFB5O43674 189 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 IFI6P09912 130 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 FREM3P0C091 2139 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 LHX2P50458 406 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 DLX5P56178 289 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 NME5P56597 212 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 MAGOHP61326 146 aaKnown RBP15.99■□□□□ 0.15
COL6A1-204ENST00000486023 POU6F2P78424 691 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-204ENST00000486023 MLC1Q15049 377 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 TNFAIP8L3Q5GJ75 292 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 OR4F3Q6IEY1 312 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 PPP4R4Q6NUP7 873 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 ARSKQ6UWY0 536 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 P4HA3Q7Z4N8 544 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 ZAR1Q86SH2 424 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 LURAP1LQ8IV03 231 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 FADS6Q8N9I5 356 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 RELL2Q8NC24 303 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-204ENST00000486023 ADAMTS15Q8TE58 950 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 RNF138Q8WVD3 245 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 INTS12Q96CB8 462 aaKnown RBP15.99■□□□□ 0.15
COL6A1-204ENST00000486023 COQ8BQ96D53 544 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 SH3YL1Q96HL8 342 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-204ENST00000486023 DPY30Q9C005 99 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 NTMQ9P121 344 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 VDAC3Q9Y277 283 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-204ENST00000486023 ZNF337Q9Y3M9 751 aa15.99■□□□□ 0.15
COL6A1-204ENST00000486023 EXPH5Q8NEV8 1989 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 H0YC42 278 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 OXSR1O95747 527 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-204ENST00000486023 TMIGD3P0DMS9 266 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-204ENST00000486023 KITP10721 976 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 CHMP24386 653 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 CTSSP25774 331 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 MAP3K8P41279 467 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 TPD52P55327 224 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-204ENST00000486023 CLDN8P56748 225 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 FOXF2Q12947 444 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 ZCCHC12Q6PEW1 402 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 TMEM200AQ86VY9 491 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 GRAMD2AQ8IUY3 354 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 RIMKLAQ8IXN7 391 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 ZZZ3Q8IYH5 903 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 CLECL1Q8IZS7 167 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 GCNT2Q8N0V5 402 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 OR56A1Q8NGH5 318 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 LRRC46Q96FV0 321 aa15.98■□□□□ 0.15
COL6A1-204ENST00000486023 BHLHE41Q9C0J9 482 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-204ENST00000486023 ZNF629Q9UEG4 869 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-204ENST00000486023 MARCOQ9UEW3 520 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-204ENST00000486023 MRPS18CQ9Y3D5 142 aaKnown RBP15.98■□□□□ 0.15
COL6A1-204ENST00000486023 MED12Q93074 2177 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 PHF3Q92576 2039 aaKnown RBP15.97■□□□□ 0.15
COL6A1-204ENST00000486023 NPIPA5A0A0B4J1W7 369 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 OR2M5A3KFT3 312 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 MBD3L4A6NDZ8 208 aaPredicted RBP15.97■□□□□ 0.15
COL6A1-204ENST00000486023 MBD3L3A6NE82 208 aaPredicted RBP15.97■□□□□ 0.15
COL6A1-204ENST00000486023 MBD3L5A6NJ08 208 aaPredicted RBP15.97■□□□□ 0.15
COL6A1-204ENST00000486023 NPIPA7E9PJI5 369 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 SCDO00767 359 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 CPSF4O95639 269 aaKnown RBP15.97■□□□□ 0.15
COL6A1-204ENST00000486023 OPN1LWP04000 364 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 NPIPA8P0DM63 369 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 PEPDP12955 493 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 IGFBP2P18065 325 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 ATP6V1C1P21283 382 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 TBXA2RP21731 343 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 CASP9P55211 416 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 CLDN18P56856 261 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 WDR4P57081 412 aaKnown RBP15.97■□□□□ 0.15
COL6A1-204ENST00000486023 B3GALT5-AS1P59052 145 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 RPS26P62854 115 aaKnown RBP15.97■□□□□ 0.15
COL6A1-204ENST00000486023 HBA1P69905 142 aa15.97■□□□□ 0.15
COL6A1-204ENST00000486023 ANKRD46Q86W74 232 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms