RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 KANK2Q63ZY3 851 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 OR2A2Q6IF42 318 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 BTLAQ7Z6A9 289 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 EIF1ADQ8N9N8 165 aaKnown RBP19.43■□□□□ 0.7
USP40-215ENST00000484528 GATSQ8NAP1 163 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 FNDC9Q8TBE3 224 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 SLC9A6Q92581 669 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 FCRL1Q96LA6 429 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 FAM111AQ96PZ2 611 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 PPCSQ9HAB8 311 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 MID2Q9UJV3 735 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 VDAC3Q9Y277 283 aa19.43■□□□□ 0.7
USP40-215ENST00000484528 ARID1AO14497 2285 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 NPIPB8E9PQR5 432 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 MSTNO14793 375 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 TRIM13O60858 407 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 ACP2P11117 423 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 NEFHP12036 1026 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 PON3Q15166 354 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 DEFB113Q30KQ7 82 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 PPP4R4Q6NUP7 873 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 FIGNL1Q6PIW4 674 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 DDIASQ8IXT1 998 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 NUP43Q8NFH3 380 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 ZFP28Q8NHY6 868 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 AGR3Q8TD06 166 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 MBD6Q96DN6 1003 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 PGM2Q96G03 612 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 PIGQQ9BRB3 760 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 MECRQ9BV79 373 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 IQCGQ9H095 443 aaKnown RBP19.42■□□□□ 0.7
USP40-215ENST00000484528 GIMAP2Q9UG22 337 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 TESMINQ9Y4I5 508 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 DNAJC15Q9Y5T4 150 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 ROS1P08922 2347 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 HEATR5AQ86XA9 2040 aa19.42■□□□□ 0.7
USP40-215ENST00000484528 GIMAP1-GIMAP5A0A087WTJ2 511 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 CASKO14936 926 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 NKX2-2O95096 273 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 CHEK2O96017 543 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 CRHP06850 196 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 IFI6P09912 130 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 KIR2DL2P43627 348 aaPredicted RBP19.41■□□□□ 0.7
USP40-215ENST00000484528 MANFP55145 182 aaKnown RBP19.41■□□□□ 0.7
USP40-215ENST00000484528 EEF1A1P68104 462 aaKnown RBP19.41■□□□□ 0.7
USP40-215ENST00000484528 PRR5P85299 388 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 C17orf67Q0P5P2 114 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 EEF1A1P5Q5VTE0 462 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 ZNF474Q6S9Z5 364 aaPredicted RBP19.41■□□□□ 0.7
USP40-215ENST00000484528 CAMKMTQ7Z624 323 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 ZAR1Q86SH2 424 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 GIMAP5Q96F15 307 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 ZBED6CLQ96FA7 236 aaPredicted RBP19.41■□□□□ 0.7
USP40-215ENST00000484528 ZNF764Q96H86 408 aaPredicted RBP19.41■□□□□ 0.7
USP40-215ENST00000484528 APOPT1Q96IL0 206 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 KLHL28Q9NXS3 571 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 C6orf203Q9P0P8 240 aaPredicted RBP19.41■□□□□ 0.7
USP40-215ENST00000484528 NDRG3Q9UGV2 375 aa19.41■□□□□ 0.7
USP40-215ENST00000484528 NIPBLQ6KC79 2804 aaeCLIP19.41■□□□□ 0.7
USP40-215ENST00000484528 TTC36A6NLP5 189 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 LSM1O15116 133 aaKnown RBP19.4■□□□□ 0.7
USP40-215ENST00000484528 TNFRSF21O75509 655 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 GOSR1O95249 250 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 ALDH3A1P30838 453 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 MAP3K8P41279 467 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 EEFSECP57772 596 aaKnown RBP19.4■□□□□ 0.7
USP40-215ENST00000484528 ADAM8P78325 824 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 PDE7AQ13946 482 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 DUSP5Q16690 384 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 VPS26BQ4G0F5 336 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 CDRT4Q8N9R6 151 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 SLC16A11Q8NCK7 471 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 OR4C3Q8NH37 302 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 CEP70Q8NHQ1 597 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 TWIST2Q8WVJ9 160 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 TRIM44Q96DX7 344 aaPredicted RBP19.4■□□□□ 0.7
USP40-215ENST00000484528 C16orf58Q96GQ5 468 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 MS4A4EQ96PG1 132 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 TRMOQ9BU70 441 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 FBXO34Q9NWN3 711 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 SLC17A7Q9P2U7 560 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 EIF3LQ9Y262 564 aaKnown RBP19.4■□□□□ 0.7
USP40-215ENST00000484528 ZNF175Q9Y473 711 aa19.4■□□□□ 0.7
USP40-215ENST00000484528 IGLV3-32A0A0A0MS00 114 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 LINC01387J3KSC0 135 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 PIP5K1BO14986 540 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 TBX19O60806 448 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 SPAG7O75391 227 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 OXSR1O95747 527 aaPredicted RBP19.39■□□□□ 0.69
USP40-215ENST00000484528 OPN1LWP04000 364 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 BCKDHAP12694 445 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 CCKARP32238 428 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 CD79BP40259 229 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 FRKP42685 505 aaPredicted RBP19.39■□□□□ 0.69
USP40-215ENST00000484528 KCNJ5P48544 419 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 RPS3AP61247 264 aaKnown RBP19.39■□□□□ 0.69
USP40-215ENST00000484528 SGCBQ16585 318 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 MFSD12Q6NUT3 480 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 ZCCHC23Q6ZST2 131 aa19.39■□□□□ 0.69
USP40-215ENST00000484528 GGNQ86UU5 652 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms