RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SETD6Q8TBK2 473 aa13.73□□□□□ -0.21
HDAC6-220ENST00000477528 CREB3L4Q8TEY5 395 aa13.73□□□□□ -0.21
HDAC6-220ENST00000477528 NSMAFQ92636 917 aa13.73□□□□□ -0.21
HDAC6-220ENST00000477528 EGLN3Q9H6Z9 239 aa13.73□□□□□ -0.21
HDAC6-220ENST00000477528 PLCXD1Q9NUJ7 323 aa13.73□□□□□ -0.21
HDAC6-220ENST00000477528 RLIMQ9NVW2 624 aa13.73□□□□□ -0.21
HDAC6-220ENST00000477528 UGT2B7P16662 529 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 LIPAP38571 399 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 CHST4Q8NCG5 386 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 OR6N2Q8NGY6 317 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 BPIFA2Q96DR5 249 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 QRSL1Q9H0R6 528 aaKnown RBP13.72□□□□□ -0.21
HDAC6-220ENST00000477528 NANSQ9NR45 359 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 VNN3Q9NY84 501 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 ZNF639Q9UID6 485 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 NPIPA5A0A0B4J1W7 369 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 TRBV2A0A0J9YWF9 115 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 NPIPA7E9PJI5 369 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 H0YC42 278 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 H0YGG7 62 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 IL1AP01583 271 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 SCG5P05408 212 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 NPIPA8P0DM63 369 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 ARF3P61204 181 aaPredicted RBP13.72□□□□□ -0.21
HDAC6-220ENST00000477528 SLC14A1Q13336 389 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 SERTAD2Q14140 314 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 GPR19Q15760 415 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 MMP21Q8N119 569 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 WASH6PQ9NQA3 447 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 NPIPA5E9PKD4 350 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 POLR1CO15160 346 aaPredicted RBP13.72□□□□□ -0.21
HDAC6-220ENST00000477528 TEKQ02763 1124 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 RASSF6Q6ZTQ3 369 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 ZNF227Q86WZ6 799 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 OR6T1Q8NGN1 323 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 TMEM168Q9H0V1 697 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 DDX31Q9H8H2 851 aaKnown RBP13.72□□□□□ -0.21
HDAC6-220ENST00000477528 NPIPA1Q9UND3 350 aa13.72□□□□□ -0.21
HDAC6-220ENST00000477528 CD22P20273 847 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 TCEA1P23193 301 aaKnown RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 RORAP35398 523 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 NUDT1P36639 197 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 MAGEA2P43356 314 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 SNRPGP62308 76 aaKnown RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 RPL6Q02878 288 aaKnown RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 SEC23BQ15437 767 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 DUSP6Q16828 381 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 PGBD2Q6P3X8 592 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 OR2AJ1Q8NGZ0 328 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 SPRYD4Q8WW59 207 aaPredicted RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 MRGPRX3Q96LB0 322 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 MED17Q9NVC6 651 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 CARD8Q9Y2G2 431 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 A0A0A6YYC8 382 aaPredicted RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 AGAP14A8MT82 685 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 I3L1I5 382 aaPredicted RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 RNF13O43567 381 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 KRT33AO76009 404 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 STOMP27105 288 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 PRKAR1BP31321 381 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 EPHA5P54756 1037 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 HNRNPKP61978 463 aaKnown RBP eCLIP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 PLCXD2Q0VAA5 305 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 EXOSC7Q15024 291 aaKnown RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 C1orf53Q5VUE5 145 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 PRAMEF8Q5VWM4 474 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 PRAMEF7Q5VXH5 474 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 TTLL10Q6ZVT0 673 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 DNAJA4Q8WW22 397 aaPredicted RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 KIR3DX1Q9H7L2 352 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 TAS2R16Q9NYV7 291 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 PLEKHM1Q9Y4G2 1056 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 TMEM14AQ9Y6G1 99 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 TMPRSS11DO60235 418 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 FBLP22087 321 aaKnown RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 C3orf38Q5JPI3 329 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 NCCRP1Q6ZVX7 275 aaPredicted RBP13.71□□□□□ -0.21
HDAC6-220ENST00000477528 OR52R1Q8NGF1 315 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 MS4A6EQ96DS6 147 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 ELP4Q96EB1 424 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 PLEKHA1Q9HB21 404 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 SDHAF3Q9NRP4 125 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 STARD5Q9NSY2 213 aa13.71□□□□□ -0.21
HDAC6-220ENST00000477528 HMGN4O00479 90 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 DUX1O43812 170 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 TNFSF8P32971 234 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 DHPSP49366 369 aaPredicted RBP13.71□□□□□ -0.22
HDAC6-220ENST00000477528 OR1Q1Q15612 314 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 DESI1Q6ICB0 168 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 BAIAP2L2Q6UXY1 529 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 MCATQ8IVS2 390 aaKnown RBP13.71□□□□□ -0.22
HDAC6-220ENST00000477528 PIGKQ92643 395 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 TBC1D20Q96BZ9 403 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 OR5M11Q96RB7 305 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 CITED4Q96RK1 184 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 CENPOQ9BU64 300 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 CFHR5Q9BXR6 569 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 RXFP3Q9NSD7 469 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 CENPMQ9NSP4 180 aa13.71□□□□□ -0.22
HDAC6-220ENST00000477528 SLC23A2Q9UGH3 650 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms