RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 USF3Q68DE3 2245 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 AQP8O94778 261 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 UTS2O95399 124 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ANGPTL1O95841 491 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SHBGP04278 402 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 NID1P14543 1247 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 IL11P20809 199 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 TCEA1P23193 301 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 NTSP30990 170 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 GABRA3P34903 492 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CCT5P48643 541 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PSMD4P55036 377 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SLC18A2Q05940 514 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PDE7AQ13946 482 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 GRAMD1BQ3KR37 738 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SH2D4BQ5SQS7 431 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 RAET1LQ5VY80 246 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SHEQ5VZ18 495 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 FBXW10Q5XX13 1052 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 BIVMQ86UB2 503 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 UBQLNLQ8IYU4 475 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 LRRC75A-AS1Q8N1F1 130 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 OR5M1Q8NGP8 315 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 OR2T11Q8NH01 316 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 OR4C3Q8NH37 302 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 FNDC9Q8TBE3 224 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 IGFBPL1Q8WX77 278 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ADGRG7Q96K78 797 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PIGQQ9BRB3 760 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PINK1Q9BXM7 581 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 OPN3Q9H1Y3 402 aaPredicted RBP11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C12orf65Q9H3J6 166 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 L2HGDHQ9H9P8 463 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PLSCR4Q9NRQ2 329 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 DDX18Q9NVP1 670 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 MRTO4Q9UKD2 239 aaKnown RBP11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PTGDR2Q9Y5Y4 395 aa11.01□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 JMJD1CQ15652 2540 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C7orf72A4D263 438 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CASKO14936 926 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ADAMDEC1O15204 470 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZNF500O60304 480 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SEC22BO75396 215 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 FGF4P08620 206 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PRPS2P11908 318 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CPA3P15088 417 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 TBXA2RP21731 343 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 NKX6-1P78426 367 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 STX5Q13190 355 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 FGFBP1Q14512 234 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PON3Q15166 354 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZNHIT3Q15649 155 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 IMPG1Q17R60 797 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CTU2Q2VPK5 515 aaKnown RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 UGT3A2Q3SY77 523 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 RFTN2Q52LD8 501 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 LIPMQ5VYY2 423 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CLEC6AQ6EIG7 209 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 FAM214BQ7L5A3 538 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CHMP1BQ7LBR1 199 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 P4HA3Q7Z4N8 544 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZAR1Q86SH2 424 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 EXOC3L1Q86VI1 746 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CNEP1R1Q8N9A8 125 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZNF610Q8N9Z0 462 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PIK3R3Q92569 461 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CIDECQ96AQ7 238 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C18orf12Q96KH6 178 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 NPAS1Q99742 590 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CCT7Q99832 543 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SMR3AQ99954 134 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 REEP4Q9H6H4 257 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C3orf14Q9HBI5 128 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ACSS1Q9NUB1 689 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C1orf109Q9NX04 203 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 KLHL28Q9NXS3 571 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C6orf203Q9P0P8 240 aaPredicted RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 EIF3LQ9Y262 564 aaKnown RBP11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CADP27708 2225 aa11□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 A0A087WZY1 265 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 C16orf97H3BN30 126 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SLC28A1O00337 649 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 LSM1O15116 133 aaKnown RBP10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SMNDC1O75940 238 aaKnown RBP eCLIP10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 KCNK2O95069 426 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 KCNH1O95259 989 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 OXSR1O95747 527 aaPredicted RBP10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 INHBBP09529 407 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 POU2F1P14859 743 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZNF17P17021 662 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SDC1P18827 310 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 LCN1P31025 176 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CPOXP36551 454 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 SLC6A8P48029 635 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 CLK3P49761 638 aaKnown RBP10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 MLC1Q15049 377 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ANKRD26P1Q6NSI1 321 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 ZCCHC12Q6PEW1 402 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 PRSS57Q6UWY2 283 aa10.99□□□□□ -0.65
MSH5-SAPCD1-205ENST00000476085 GTPBP8Q8N3Z3 284 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms