RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 FIG4Q92562 907 aa16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 PPCDCQ96CD2 204 aa16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 MECRQ9BV79 373 aa16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 TBL1XR1Q9BZK7 514 aa16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 PTGES2Q9H7Z7 377 aa16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 ANKZF1Q9H8Y5 726 aa16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 C3orf14Q9HBI5 128 aa16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 TMED5Q9Y3A6 229 aa16.94■□□□□ 0.3
CCDC88B-206ENST00000473405 H3BML4 177 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 LINC01387J3KSC0 135 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 SEC14L5O43304 696 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 RAF1P04049 648 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 ACP2P11117 423 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 ALDH3A1P30838 453 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 KIR2DL2P43627 348 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 DIO3P55073 304 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 EEF1A1P68104 462 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 POU4F3Q15319 338 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 GALNTL6Q49A17 601 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 EEF1A1P5Q5VTE0 462 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 OR2A2Q6IF42 318 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 P4HA3Q7Z4N8 544 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 ZAR1Q86SH2 424 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 TRABD2AQ86V40 505 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 CNEP1R1Q8N9A8 125 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 CDRT4Q8N9R6 151 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 SLC16A11Q8NCK7 471 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 ZFP28Q8NHY6 868 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 FNDC9Q8TBE3 224 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 TWIST2Q8WVJ9 160 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 ZBED6CLQ96FA7 236 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 ZNF845Q96IR2 970 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 MS4A4EQ96PG1 132 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 PIGQQ9BRB3 760 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 YIPF4Q9BSR8 244 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 PINK1Q9BXM7 581 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 RNF122Q9H9V4 155 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 ACSS1Q9NUB1 689 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 SLC17A7Q9P2U7 560 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 TESMINQ9Y4I5 508 aa16.93■□□□□ 0.3
CCDC88B-206ENST00000473405 SHISA8B8ZZ34 492 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 PIP5K1BO14986 540 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 GMFGO60234 142 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 TNFRSF21O75509 655 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 CHEK2O96017 543 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 NGFRP08138 427 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 FGF4P08620 206 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 BCKDHAP12694 445 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 CD99P14209 185 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 KLK2P20151 261 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 EFNA1P20827 205 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 CCKARP32238 428 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 CLK3P49761 638 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 PRKAG1P54619 331 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 C17orf67Q0P5P2 114 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 GUSBP1Q15486 140 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 GLYR1Q49A26 553 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 VPS26BQ4G0F5 336 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 ARL13AQ5H913 290 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 EXOSC6Q5RKV6 272 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 MFSD12Q6NUT3 480 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 CHMP1BQ7LBR1 199 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 CAMKMTQ7Z624 323 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 BTLAQ7Z6A9 289 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 GGNQ86UU5 652 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 NUP43Q8NFH3 380 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 OR4C3Q8NH37 302 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 SMPDL3BQ92485 455 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 SLC9A6Q92581 669 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 FAM111AQ96PZ2 611 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 IQCGQ9H095 443 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 SH3BP4Q9P0V3 963 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 GIMAP2Q9UG22 337 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 EDARQ9UNE0 448 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 ZNF175Q9Y473 711 aa16.92■□□□□ 0.3
CCDC88B-206ENST00000473405 TLDC2A0PJX2 215 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 ALG1L2C9J202 215 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 NPHS1O60500 1241 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 SMNDC1O75940 238 aaKnown RBP eCLIP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 OXSR1O95747 527 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 NUDT17P0C025 328 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 ARRB2P32121 409 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 MANFP55145 182 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 EEFSECP57772 596 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 FAM27E3Q08E93 113 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 PON3Q15166 354 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 DUSP5Q16690 384 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 XKR7Q5GH72 579 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 ZNF474Q6S9Z5 364 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 SZRD1Q7Z422 152 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 DDIASQ8IXT1 998 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 RIBC1Q8N443 379 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 METTL25Q8N6Q8 603 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 CEP70Q8NHQ1 597 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 FAM110BQ8TC76 370 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 TRIM44Q96DX7 344 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 MTERF3Q96E29 417 aa16.91■□□□□ 0.3
CCDC88B-206ENST00000473405 OTUB1Q96FW1 271 aaPredicted RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms