RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SP140LQ9H930 580 aa17.79■□□□□ 0.44
VIM-203ENST00000469543 NCR1O76036 304 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 CPMP14384 443 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 TYRP1P17643 537 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 ENDOUP21128 410 aaKnown RBP17.78■□□□□ 0.44
VIM-203ENST00000469543 GSTM3P21266 225 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 HTR2AP28223 471 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 ZNF136P52737 540 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 CDH11P55287 796 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 SHC2P98077 582 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 NDUFA9Q16795 377 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 NXNL2Q5VZ03 156 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 SLC36A4Q6YBV0 504 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 LAPTM4BQ86VI4 370 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 OR2L13Q8N349 312 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 PIGXQ8TBF5 258 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 MS4A4EQ96PG1 132 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 TBX5Q99593 518 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 TMED9Q9BVK6 235 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 TBC1D17Q9HA65 648 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 SYT5O00445 386 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 SURF4O15260 269 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 KCNJ13O60928 360 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 SNX4O95219 450 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 ZGLP1P0C6A0 271 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 IMPDH2P12268 514 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 CPEP16870 476 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 MAGEA10P43363 369 aaPredicted RBP17.78■□□□□ 0.44
VIM-203ENST00000469543 TSFMP43897 325 aaKnown RBP17.78■□□□□ 0.44
VIM-203ENST00000469543 LARS2Q15031 903 aaKnown RBP17.78■□□□□ 0.44
VIM-203ENST00000469543 CDC73Q6P1J9 531 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 SLC22A18ASQ8N1D0 253 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 OR13H1Q8NG92 308 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 ACOT11Q8WXI4 607 aaPredicted RBP17.78■□□□□ 0.44
VIM-203ENST00000469543 HCAR1Q9BXC0 346 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 MTHFD2LQ9H903 347 aaPredicted RBP17.78■□□□□ 0.44
VIM-203ENST00000469543 CPNE5Q9HCH3 593 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 LYARQ9NX58 379 aaKnown RBP17.78■□□□□ 0.44
VIM-203ENST00000469543 KLHL28Q9NXS3 571 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 PLEKHB1Q9UF11 243 aaPredicted RBP17.78■□□□□ 0.44
VIM-203ENST00000469543 PILRAQ9UKJ1 303 aa17.78■□□□□ 0.44
VIM-203ENST00000469543 A0A1W2PQL4 384 aaPredicted RBP17.77■□□□□ 0.44
VIM-203ENST00000469543 B3GALT2O43825 422 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 SMIM10L1P0DMW3 83 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 NT5EP21589 574 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 PRKAR1BP31321 381 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 CDC20Q12834 499 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 SUZ12Q15022 739 aaKnown RBP17.77■□□□□ 0.44
VIM-203ENST00000469543 SLC25A30Q5SVS4 291 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 RASSF6Q6ZTQ3 369 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 CPOQ8IVL8 374 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 TRIM48Q8IWZ4 208 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 HMGB4Q8WW32 186 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 SMIM10Q96HG1 83 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 ISG20L2Q9H9L3 353 aaKnown RBP17.77■□□□□ 0.44
VIM-203ENST00000469543 HRASLS2Q9NWW9 162 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 IL20Q9NYY1 176 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 SF3B6Q9Y3B4 125 aaKnown RBP17.77■□□□□ 0.44
VIM-203ENST00000469543 SLC22A7Q9Y694 548 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 PIAS3Q9Y6X2 628 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 SHISA3A0PJX4 238 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 SGK494L7N484 410 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 ASNA1O43681 348 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 CDC123O75794 336 aaPredicted RBP17.77■□□□□ 0.44
VIM-203ENST00000469543 CELP19835 753 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 TMED10P49755 219 aaKnown RBP17.77■□□□□ 0.44
VIM-203ENST00000469543 FXYD6P3P58550 94 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 DAB2P98082 770 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 TMPRSS11AQ6ZMR5 421 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 ABI3BPQ7Z7G0 1075 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 POGLUT1Q8NBL1 392 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 MIXL1Q9H2W2 232 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 FAM60AQ9NP50 221 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 NCKAP1Q9Y2A7 1128 aa17.77■□□□□ 0.44
VIM-203ENST00000469543 ALPK2Q86TB3 2170 aa17.77■□□□□ 0.43
VIM-203ENST00000469543 GXYLT2A0PJZ3 443 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 SLC35F4A4IF30 521 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 PRKNO60260 465 aaPredicted RBP17.76■□□□□ 0.43
VIM-203ENST00000469543 ATP6V1E1P36543 226 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 RAB40BQ12829 278 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 KLHL22Q53GT1 634 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 MRPL2Q5T653 305 aaKnown RBP17.76■□□□□ 0.43
VIM-203ENST00000469543 PEX5LQ8IYB4 626 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 SLC25A46Q96AG3 418 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 MRPL38Q96DV4 380 aaKnown RBP17.76■□□□□ 0.43
VIM-203ENST00000469543 SLC38A2Q96QD8 506 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 SERINC2Q96SA4 455 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 PRSS27Q9BQR3 290 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 HINT3Q9NQE9 182 aaKnown RBP17.76■□□□□ 0.43
VIM-203ENST00000469543 SEC16AO15027 2179 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 C2orf92A0A1B0GVN3 265 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 TCRBV21S2A2A0A5A6 115 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 DUXAA6NLW8 204 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 ADAM11O75078 769 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 MAKP20794 623 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 HNRNPA2B1P22626 353 aaKnown RBP17.76■□□□□ 0.43
VIM-203ENST00000469543 ETV6P41212 452 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 VSX2P58304 361 aaPredicted RBP17.76■□□□□ 0.43
VIM-203ENST00000469543 PSPHP78330 225 aa17.76■□□□□ 0.43
VIM-203ENST00000469543 PLBD1Q6P4A8 553 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms