RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 IL20RBQ6UXL0 311 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PLEKHG7Q6ZR37 379 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 LHFPL3Q86UP9 236 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 TSPYL5Q86VY4 417 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 OR2A1Q8NGT9 310 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ADAMTS16Q8TE57 1224 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 OMA1Q96E52 524 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 SFXN2Q96NB2 322 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 GDF15Q99988 308 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 TNFRSF12AQ9NP84 129 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PRDM9Q9NQV7 894 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 GMPR2Q9P2T1 348 aaKnown RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DAPP1Q9UN19 280 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 NOX1Q9Y5S8 564 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 LOC105369274A0A096LPK9 316 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 LOC102723532A0A0G2JNH3 316 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 SH3PXD2BA1X283 911 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 GJE1A6NN92 205 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PLOD3O60568 738 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 IFNA6P05013 189 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ICAM2P13598 275 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 SLC15A1P46059 708 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 BNIP3Q12983 259 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 MFSD13AQ14CX5 517 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 KCTD18Q6PI47 426 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 OR4N4Q8N0Y3 316 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 NEURL3Q96EH8 262 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 SLC29A1Q99808 456 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 GPN2Q9H9Y4 310 aaPredicted RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PTTG2Q9NZH5 202 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ERVK-18Q9QC07 812 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 IGHV1OR15-9A0A0B4J2B8 117 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 UBE2QL1A1L167 161 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 NDUFB2O95178 105 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 FUT1P19526 365 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ROR2Q01974 943 aaKnown RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 TLE3Q04726 772 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 MRPL2Q5T653 305 aaKnown RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 WDR20Q8TBZ3 569 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 NUDT8Q8WV74 236 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 QRSL1Q9H0R6 528 aaKnown RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PLAC1Q9HBJ0 212 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 TIMMDC1Q9NPL8 285 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 AGPAT4Q9NRZ5 378 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PPT2Q9UMR5 302 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 GPR52Q9Y2T5 361 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 SNX11Q9Y5W9 270 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 A0A1B0GW55 424 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 EPOPA6NHQ4 379 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PPP1R3DO95685 299 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 IGHEP01854 428 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DUX4L2P0CJ85 424 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DUX4L3P0CJ86 424 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DUX4L4P0CJ87 422 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DUX4L5P0CJ88 424 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DUX4L6P0CJ89 424 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DUX4L7P0CJ90 424 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 CELP19835 753 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 MAGEA8P43361 318 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PLP2Q04941 152 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ENTPD8Q5MY95 495 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 COX20Q5RI15 118 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PLBD1Q6P4A8 553 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 LEG1Q6P5S2 330 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ULK3Q6PHR2 472 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 FAM180AQ6UWF9 173 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 MEX3DQ86XN8 651 aaKnown RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF100Q8IYN0 542 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 FBXL6Q8N531 539 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF675Q8TD23 568 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ELP4Q96EB1 424 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PHF12Q96QT6 1004 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 OR5B2Q96R09 309 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 OR4K3Q96R72 315 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 BCL2L14Q9BZR8 327 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 FOLH1BQ9HBA9 442 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 WASH6PQ9NQA3 447 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DUX4Q9UBX2 424 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 KLHL21Q9UJP4 597 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ABCG2Q9UNQ0 655 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 RNF6Q9Y252 685 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 HSPE1-MOB4S4R3N1 261 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 MAP1BP46821 2468 aaKnown RBP6.93□□□□□ -1.3
SYNE1-213ENST00000448038 KCNK5O95279 499 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 STSP08842 583 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF43P17038 809 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ITIH1P19827 911 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 DCKP27707 260 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 SSTR4P31391 388 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 GFERP55789 205 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ACTC1P68032 377 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ACTA1P68133 377 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 HLA-BQ31612 363 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 CNPY1Q3B7I2 92 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 NKAIN1Q4KMZ8 207 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 PGM2L1Q6PCE3 622 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 BTN2A1Q7KYR7 527 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF283Q8N7M2 679 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 ABHD11Q8NFV4 315 aa6.93□□□□□ -1.3
SYNE1-213ENST00000448038 NLGN4YQ8NFZ3 816 aaPredicted RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms