RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 C11orf24Q96F05 449 aaPredicted RBP13.06□□□□□ -0.32
SDC1-204ENST00000429035 Q96MF0 132 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 AMDHD1Q96NU7 426 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 RHOXF2Q9BQY4 288 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 LMF2Q9BU23 707 aaKnown RBP13.06□□□□□ -0.32
SDC1-204ENST00000429035 RRAGDQ9NQL2 400 aaPredicted RBP13.06□□□□□ -0.32
SDC1-204ENST00000429035 EMCNQ9ULC0 261 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 ZNF175Q9Y473 711 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 PTGDR2Q9Y5Y4 395 aa13.06□□□□□ -0.32
SDC1-204ENST00000429035 RAI1Q7Z5J4 1906 aaPredicted RBP13.05□□□□□ -0.32
SDC1-204ENST00000429035 C16orf97H3BN30 126 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 H7C1Q1 480 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 EMC8O43402 210 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 AKAP10O43572 662 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 SEC22BO75396 215 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 TNFRSF21O75509 655 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 FPR1P21462 350 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 CTBP2P56545 445 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 FGFBP1Q14512 234 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 SLC29A2Q14542 456 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 CLEC6AQ6EIG7 209 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 IKBIPQ70UQ0 350 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 YTHDF3Q7Z739 585 aaKnown RBP13.05□□□□□ -0.32
SDC1-204ENST00000429035 IFT20Q8IY31 132 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 METTL25Q8N6Q8 603 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 CLHC1Q8NHS4 586 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 ZFP28Q8NHY6 868 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 JADE3Q92613 823 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 OTUB1Q96FW1 271 aaPredicted RBP13.05□□□□□ -0.32
SDC1-204ENST00000429035 CHMP6Q96FZ7 201 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 HS3ST6Q96QI5 342 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 TMEM185BQ9H7F4 350 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 RNF122Q9H9V4 155 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 SIRT5Q9NXA8 310 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 ELOVL5Q9NYP7 299 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 DCDC2Q9UHG0 476 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 EMC9Q9Y3B6 208 aa13.05□□□□□ -0.32
SDC1-204ENST00000429035 A0A1W2PPM1 405 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 SERTM1A2A2V5 107 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 G3V2L1 256 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 LINC01387J3KSC0 135 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 NDUFB5O43674 189 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 AQP8O94778 261 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 PSMG1O95456 288 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 IGKV1D-16P01601 117 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 OPN1LWP04000 364 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 PROCP04070 461 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 FAM153BP0C7A2 387 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 EFNA1P20827 205 aaPredicted RBP13.04□□□□□ -0.32
SDC1-204ENST00000429035 RPL38P63173 70 aaKnown RBP13.04□□□□□ -0.32
SDC1-204ENST00000429035 C17orf67Q0P5P2 114 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 ACKR1Q16570 336 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 FAM153CQ494X1 144 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 ALKBH2Q6NS38 261 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 FIGNL1Q6PIW4 674 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 EXOC3L1Q86VI1 746 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 FAM76AQ8TAV0 307 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 PPCDCQ96CD2 204 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 SH3YL1Q96HL8 342 aaPredicted RBP13.04□□□□□ -0.32
SDC1-204ENST00000429035 EGLN2Q96KS0 407 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 TSSK3Q96PN8 268 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 C12orf65Q9H3J6 166 aaKnown RBP13.04□□□□□ -0.32
SDC1-204ENST00000429035 LRTM1Q9HBL6 345 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 TNFRSF12AQ9NP84 129 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 SH3BP4Q9P0V3 963 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 AP4B1Q9Y6B7 739 aa13.04□□□□□ -0.32
SDC1-204ENST00000429035 RGS14O43566 566 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 SYNGR4O95473 234 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 OXSR1O95747 527 aaPredicted RBP13.03□□□□□ -0.32
SDC1-204ENST00000429035 HEXAP06865 529 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 UROSP10746 265 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 CD8BP10966 210 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 PRPS2P11908 318 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 HPGDP15428 266 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 PCSK6P29122 969 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 SLC6A8P48029 635 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 ZNF41P51814 821 aaPredicted RBP13.03□□□□□ -0.32
SDC1-204ENST00000429035 VPS26BQ4G0F5 336 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 ZNF385BQ569K4 471 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 APOOLQ6UXV4 268 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 FAM214BQ7L5A3 538 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 TRIM46Q7Z4K8 759 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 GGNQ86UU5 652 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 NUP43Q8NFH3 380 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 OR10D3Q8NH80 312 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 MZB1Q8WU39 189 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 UBLCP1Q8WVY7 318 aaPredicted RBP13.03□□□□□ -0.32
SDC1-204ENST00000429035 RNF145Q96MT1 663 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 MS4A4EQ96PG1 132 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 STOML1Q9UBI4 398 aa13.03□□□□□ -0.32
SDC1-204ENST00000429035 MCTS1Q9ULC4 181 aaKnown RBP13.03□□□□□ -0.32
SDC1-204ENST00000429035 ROS1P08922 2347 aa13.02□□□□□ -0.32
SDC1-204ENST00000429035 TRIM64A6NGJ6 449 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 TRIM64BA6NI03 449 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 TTC36A6NLP5 189 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 FAM171A2A8MVW0 826 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 H3BQF6 201 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 SLC28A1O00337 649 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 TNFSF11O14788 317 aa13.02□□□□□ -0.33
SDC1-204ENST00000429035 CXCL13O43927 109 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms