RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 RNF130Q86XS8 419 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 PM20D2Q8IYS1 436 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 OR52N2Q8NGI0 321 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 NEIL3Q8TAT5 605 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 FAM57AQ8TBR7 257 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 ZFP90Q8TF47 636 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 XAGE5Q8WWM1 108 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 OTUB1Q96FW1 271 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-206ENST00000414829 GNRHR2Q96P88 292 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 TRNT1Q96Q11 434 aaKnown RBP13.36□□□□□ -0.27
LIMS1-206ENST00000414829 DEFB127Q9H1M4 99 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 TPT1P8Q9HAU6 139 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 P2RX2Q9UBL9 471 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 NDUFAF1Q9Y375 327 aa13.36□□□□□ -0.27
LIMS1-206ENST00000414829 RP1L1Q8IWN7 2480 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-206ENST00000414829 IGLV3-32A0A0A0MS00 114 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 TRGV8A0A0C4DH27 118 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 A0A1B0GTH9 108 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 LINC01387J3KSC0 135 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 AGFG2O95081 481 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 ANGPTL1O95841 491 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 ACTL6AO96019 429 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 IGKV1D-16P01601 117 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 SNRPB2P08579 225 aaKnown RBP13.35□□□□□ -0.27
LIMS1-206ENST00000414829 HOXD4P09016 255 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-206ENST00000414829 LSP1P33241 339 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 PTGER4P35408 488 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 CDKN2CP42773 168 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 GAS1P54826 345 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 SUMO3P55854 103 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-206ENST00000414829 DSCR4P56555 118 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-206ENST00000414829 EIF2S3LQ2VIR3 472 aaKnown RBP13.35□□□□□ -0.27
LIMS1-206ENST00000414829 COQ5Q5HYK3 327 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 LRIF1Q5T3J3 769 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 CCNJQ5T5M9 372 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 WLSQ5T9L3 541 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 FNDC7Q5VTL7 733 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 CPLX4Q7Z7G2 160 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 FUNDC1Q8IVP5 155 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 RELTQ969Z4 430 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 SDF2Q99470 211 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 OR2B2Q9GZK3 357 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 TP63Q9H3D4 680 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-206ENST00000414829 STOML1Q9UBI4 398 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 WDR45Q9Y484 360 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 GMEB1Q9Y692 573 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 CROCCQ5TZA2 2017 aa13.35□□□□□ -0.27
LIMS1-206ENST00000414829 NBASA2RRP1 2371 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 A0A087WZY1 265 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 C15orf38-AP3S2A0A0A6YYH1 394 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 GMNCA6NCL1 334 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 EVPLLA8MZ36 301 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 PYCARD-AS1I3L0S3 204 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 KIAA0513O60268 411 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 PDE9AO76083 593 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 GSNP06396 782 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 TPOP07202 933 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 RFPL3SP0C7P2 107 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 OR12D1P0DN82 309 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 NR2F1P10589 423 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 GABRA1P14867 456 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 CAPN3P20807 821 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 CRATP43155 626 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 STX5Q13190 355 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 GPAT3Q53EU6 434 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 NHSL2Q5HYW2 709 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 DESI1Q6ICB0 168 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 CGB2Q6NT52 195 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 SLC2A7Q6PXP3 512 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 ENPP6Q6UWR7 440 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 IFNEQ86WN2 208 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 CLEC4FQ8N1N0 589 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 ZNF619Q8N2I2 560 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 DPP10Q8N608 796 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 FADS6Q8N9I5 356 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 WDSUB1Q8N9V3 476 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 TOR1AIP2Q8NFQ8 470 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 OR4C3Q8NH37 302 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 OR14L1PQ8NHC6 308 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 C10orf82Q8WW14 230 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 ROPN1LQ96C74 230 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 SERHL2Q9H4I8 314 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 TAS2R10Q9NYW0 307 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.34□□□□□ -0.27
LIMS1-206ENST00000414829 ACAD8Q9UKU7 415 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 CAPN7Q9Y6W3 813 aa13.34□□□□□ -0.27
LIMS1-206ENST00000414829 FASNP49327 2511 aaKnown RBP13.34□□□□□ -0.27
LIMS1-206ENST00000414829 E9PLN8 166 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 CLIC1O00299 241 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 HMGN4O00479 90 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 WDR1O75083 606 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 NPPAP01160 153 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 ESRRAP11474 423 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-206ENST00000414829 DPP4P27487 766 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 ZNF41P51814 821 aaPredicted RBP13.33□□□□□ -0.28
LIMS1-206ENST00000414829 CRISP3P54108 245 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 DSTNP60981 165 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 GNGT1P63211 74 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 HSF1Q00613 529 aa13.33□□□□□ -0.28
LIMS1-206ENST00000414829 ZNF141Q15928 474 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms