RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TMEM92Q6UXU6 159 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 PEX5LQ8IYB4 626 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 ARL14Q8N4G2 192 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 OR13H1Q8NG92 308 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 OR13C2Q8NGS9 318 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 OR4Q3Q8NH05 313 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 APOBEC4Q8WW27 367 aaKnown RBP12.5□□□□□ -0.41
VPS54-203ENST00000409558 SPRYD4Q8WW59 207 aaPredicted RBP12.5□□□□□ -0.41
VPS54-203ENST00000409558 TTYH2Q9BSA4 534 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 MAU2Q9Y6X3 613 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 B3GALT2O43825 422 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 IFNA16P05015 189 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 KRT8P05787 483 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 UGT2B7P16662 529 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 TLX1P31314 330 aaPredicted RBP12.5□□□□□ -0.41
VPS54-203ENST00000409558 CD83Q01151 205 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 ST3GAL3Q11203 375 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 ATP6V1C2Q8NEY4 427 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 RASSF5Q8WWW0 418 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 C1QTNF2Q9BXJ5 285 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 SNX7Q9UNH6 387 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 A0A0A6YYC8 382 aaPredicted RBP12.5□□□□□ -0.41
VPS54-203ENST00000409558 I3L1I5 382 aaPredicted RBP12.5□□□□□ -0.41
VPS54-203ENST00000409558 HRKO00198 91 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 TRAM2Q15035 370 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 FLYWCH1Q4VC44 716 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 MRPL2Q5T653 305 aaKnown RBP12.5□□□□□ -0.41
VPS54-203ENST00000409558 Q6ZS52 159 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 GDF7Q7Z4P5 450 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 TRIM69Q86WT6 500 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 OR56A1Q8NGH5 318 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 RSC1A1Q92681 617 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 GAS2L1Q99501 681 aaPredicted RBP12.5□□□□□ -0.41
VPS54-203ENST00000409558 HCAR1Q9BXC0 346 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 GPR174Q9BXC1 333 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 C1QTNF7Q9BXJ2 289 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 RWDD3Q9Y3V2 267 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 MUC3AQ02505 3323 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 SCG5P05408 212 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 NAA10P41227 235 aaPredicted RBP12.49□□□□□ -0.41
VPS54-203ENST00000409558 KIR2DL1P43626 348 aaPredicted RBP12.49□□□□□ -0.41
VPS54-203ENST00000409558 LSSP48449 732 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 ILF3Q12906 894 aaKnown RBP eCLIP12.49□□□□□ -0.414e-9■■■■□ 23.7
VPS54-203ENST00000409558 E2F2Q14209 437 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 IDNKQ5T6J7 187 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 PEX11GQ96HA9 241 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 KCND3Q9UK17 655 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 HPGDSO60760 199 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 NDUFV2P19404 249 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 CRYBB2P43320 205 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 ANXA11P50995 505 aaKnown RBP12.49□□□□□ -0.41
VPS54-203ENST00000409558 FOXL2P58012 376 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 FABP5Q01469 135 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 SF3B4Q15427 424 aaKnown RBP eCLIP12.49□□□□□ -0.416e-10■■■■■ 33.6
VPS54-203ENST00000409558 ODF4Q2M2E3 257 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 ZNF57Q68EA5 555 aaPredicted RBP12.49□□□□□ -0.41
VPS54-203ENST00000409558 RNF44Q7L0R7 432 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 MRGPRX1Q96LB2 322 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 BMFQ96LC9 184 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 B3GNT3Q9Y2A9 372 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.49□□□□□ -0.41
VPS54-203ENST00000409558 GRIP1Q9Y3R0 1128 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 CHST2Q9Y4C5 530 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 J3QLW9 94 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 CT62P0C5K7 136 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 ZNF19P17023 458 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 AVL9Q8NBF6 648 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 C9orf43Q8TAL5 461 aaPredicted RBP12.49□□□□□ -0.41
VPS54-203ENST00000409558 CDCA4Q9BXL8 241 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 ACTRT3Q9BYD9 372 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 FN3KQ9H479 309 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 HINT3Q9NQE9 182 aaKnown RBP12.49□□□□□ -0.41
VPS54-203ENST00000409558 ACTR10Q9NZ32 417 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 NDOR1Q9UHB4 597 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 STUB1Q9UNE7 303 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 AP1M2Q9Y6Q5 423 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 KIAA1671Q9BY89 1806 aa12.49□□□□□ -0.41
VPS54-203ENST00000409558 PLXNA2O75051 1894 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 A0A1W2PRQ8 180 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 SH3D21A4FU49 640 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 C12orf71A8MTZ7 269 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 CASC3O15234 703 aaKnown RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 BMP7P18075 431 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 CTHP32929 405 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 LARS2Q15031 903 aaKnown RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 PAMR1Q6UXH9 720 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 NANOGP1Q8N7R0 232 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 MORN4Q8NDC4 146 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 TTLQ8NG68 377 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 OR13C5Q8NGS8 318 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 WDR92Q96MX6 357 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 WBP11Q9Y2W2 641 aaKnown RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 A0A1W2PQF6 199 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 SLC30A4O14863 429 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 UBXN7O94888 489 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 TP53P04637 393 aaPredicted RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 TCEA1P23193 301 aaKnown RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 HYAL1Q12794 435 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 HYAL4Q2M3T9 481 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 ZNF836Q6ZNA1 936 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms