RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 LCN8Q6JVE9 175 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 APOOLQ6UXV4 268 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 PIWIL3Q7Z3Z3 882 aaKnown RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 ZAR1Q86SH2 424 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 EID3Q8N140 333 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 TMEM178AQ8NBL3 297 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 OR4N2Q8NGD1 307 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 TMBIM1Q969X1 311 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 MIB2Q96AX9 1013 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 RTN4RQ9BZR6 473 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 DNAJB12Q9NXW2 375 aaKnown RBP6.41□□□□□ -1.38
LIMA1-202ENST00000394943 STMN3Q9NZ72 180 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 HRH3Q9Y5N1 445 aa6.41□□□□□ -1.38
LIMA1-202ENST00000394943 HTR3EA5X5Y0 456 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 AQP7O14520 342 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 TNNI3P19429 210 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 CASRP41180 1078 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 KCNJ5P48544 419 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF155Q12901 538 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-202ENST00000394943 BNIP2Q12982 314 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 GLIPR1L2Q4G1C9 344 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 LIN52Q52LA3 116 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 SLC22A10Q63ZE4 541 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 REEP3Q6NUK4 255 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF605Q86T29 641 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 PATL1Q86TB9 770 aaKnown RBP6.4□□□□□ -1.38
LIMA1-202ENST00000394943 AMER2Q8N7J2 671 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ACBD4Q8NC06 268 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 TNIP2Q8NFZ5 429 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ASB15Q8WXK1 588 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 NR4A3Q92570 626 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 EXTL1Q92935 676 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 BOD1Q96IK1 185 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 CNPPD1Q9BV87 410 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 PRDM14Q9GZV8 571 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 SPAG4Q9NPE6 437 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ARMCX1Q9P291 453 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 G3BP2Q9UN86 482 aaKnown RBP6.4□□□□□ -1.38
LIMA1-202ENST00000394943 FREM2Q5SZK8 3169 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 CDHR4A6H8M9 788 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 OR14I1A6ND48 311 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 MASP2O00187 686 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 LINGO3P0C6S8 592 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 CCL3P10147 92 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 THRBP10828 461 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ITGA3P26006 1051 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 SRD5A2P31213 254 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 GABRA3P34903 492 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ACAA2P42765 397 aaKnown RBP6.4□□□□□ -1.38
LIMA1-202ENST00000394943 NR0B1P51843 470 aaKnown RBP6.4□□□□□ -1.38
LIMA1-202ENST00000394943 PLCXD2Q0VAA5 305 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 EPS8Q12929 822 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 NFYCQ13952 458 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 SOWAHCQ53LP3 525 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ZNF766Q5HY98 468 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 MFSD4BQ5TF39 518 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 TIGD3Q6B0B8 471 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 FAAH2Q6GMR7 532 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 CBLL1Q75N03 491 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 SULF2Q8IWU5 870 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 RASSF5Q8WWW0 418 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 LIPHQ8WWY8 451 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ZBTB8AQ96BR9 441 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 OSBPL11Q9BXB4 747 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 MAGIXQ9H6Y5 334 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 ANKRA2Q9H9E1 313 aa6.4□□□□□ -1.38
LIMA1-202ENST00000394943 PINLYPA6NC86 204 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 ICOSLGO75144 302 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 LGI1O95970 557 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 OR12D1P0DN82 309 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 PRKAR1AP10644 381 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 ETFAP13804 333 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 CPN1P15169 458 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 DCTP40126 519 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 ZNF136P52737 540 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 CRISP3P54108 245 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 PSME3P61289 254 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 C17orf67Q0P5P2 114 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 LASP1Q14847 261 aaKnown RBP6.4□□□□□ -1.39
LIMA1-202ENST00000394943 GUSBP1Q15486 140 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 KRTCAP3Q53RY4 240 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 SWT1Q5T5J6 900 aaKnown RBP6.4□□□□□ -1.39
LIMA1-202ENST00000394943 FAM180BQ6P0A1 224 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 RINLQ6ZS11 566 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 FGD2Q7Z6J4 655 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 PRSS58Q8IYP2 241 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 MICU2Q8IYU8 434 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 ANKFN1Q8N957 763 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 OR10G3Q8NGC4 313 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 ADAMTS15Q8TE58 950 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 ADGRG7Q96K78 797 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 SDHAF3Q9NRP4 125 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 TAS2R1Q9NYW7 299 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 FLRT3Q9NZU0 649 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 LRFN1Q9P244 771 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 BCAP29Q9UHQ4 241 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 FAF1Q9UNN5 650 aaPredicted RBP6.4□□□□□ -1.39
LIMA1-202ENST00000394943 CROCCQ5TZA2 2017 aa6.4□□□□□ -1.39
LIMA1-202ENST00000394943 PRORSD1PA6NEY8 169 aa6.39□□□□□ -1.39
LIMA1-202ENST00000394943 SERINC4A6NH21 518 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms