RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 MEIS3P1A6NDR6 274 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 RAF1P04049 648 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 FXYD6P3P58550 94 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 BEX5Q5H9J7 111 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 PIP5KL1Q5T9C9 394 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 C15orf40Q8WUR7 153 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 PITX2Q99697 317 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 NOX3Q9HBY0 568 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 TLR9Q9NR96 1032 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 ACER3Q9NUN7 267 aa13.43□□□□□ -0.26
RTF1-201ENST00000389629 SLC22A31A6NKX4 558 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 TMEM189-UBE2V1I3L0A0 370 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 SLC25A12O75746 678 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 SDHBP21912 280 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 GRK6P43250 576 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 PFN3P60673 137 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 CCSMST1Q4G0I0 132 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 LRRTM4Q86VH4 590 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 ZNF227Q86WZ6 799 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 SLC38A5Q8WUX1 472 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 KATNB1Q9BVA0 655 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 ABCG4Q9H172 646 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 MKKSQ9NPJ1 570 aaPredicted RBP13.42□□□□□ -0.26
RTF1-201ENST00000389629 KLHL42Q9P2K6 505 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 NDOR1Q9UHB4 597 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 SIPA1L1O43166 1804 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 A0A0A6YYJ9 748 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 MCIDASD6RGH6 385 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 BLOC1S5-TXNDC5H3BN57 136 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 MAS1P04201 325 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 AHCYP23526 432 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 EXOSC2Q13868 293 aaKnown RBP13.42□□□□□ -0.26
RTF1-201ENST00000389629 KHDRBS2Q5VWX1 349 aaKnown RBP13.42□□□□□ -0.26
RTF1-201ENST00000389629 HLA-DQA1Q5Y7H0 255 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 SLC8B1Q6J4K2 584 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 ANGPTL6Q8NI99 470 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 C7orf50Q9BRJ6 194 aaKnown RBP13.42□□□□□ -0.26
RTF1-201ENST00000389629 PRR14Q9BWN1 585 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 MYNNQ9NPC7 610 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 BABAM2Q9NXR7 383 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 GLS2Q9UI32 602 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 DIMT1Q9UNQ2 313 aaKnown RBP13.42□□□□□ -0.26
RTF1-201ENST00000389629 UBR3Q6ZT12 1888 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 DBIP07108 87 aaKnown RBP13.42□□□□□ -0.26
RTF1-201ENST00000389629 SLC35G6P0C7Q6 338 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 S100A10P60903 97 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 TRAM1Q15629 374 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 GPR135Q8IZ08 494 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 OR56B4Q8NH76 319 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 FIBINQ8TAL6 211 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 LCN9Q8WX39 176 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 ERVMER34-1Q9H9K5 563 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 GSKIPQ9P0R6 139 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 MN1Q10571 1320 aaPredicted RBP13.42□□□□□ -0.26
RTF1-201ENST00000389629 H0YIV9 168 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 LRRTM2O43300 516 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 VEGFCP49767 419 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 ZNF805Q5CZA5 627 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 APOOLQ6UXV4 268 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 C17orf107Q6ZR85 190 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 LILRA3Q8N6C8 439 aaPredicted RBP13.42□□□□□ -0.26
RTF1-201ENST00000389629 TTLQ8NG68 377 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 WFDC5Q8TCV5 224 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 SFXN2Q96NB2 322 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 GPER1Q99527 375 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 MED20Q9H944 212 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 HHATLQ9HCP6 504 aa13.42□□□□□ -0.26
RTF1-201ENST00000389629 NUDT1P36639 197 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 HSD17B2P37059 387 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 MRPL19P49406 292 aaKnown RBP13.41□□□□□ -0.26
RTF1-201ENST00000389629 PUM1Q14671 1186 aaKnown RBP eCLIP13.41□□□□□ -0.266e-9■□□□□ 10
RTF1-201ENST00000389629 PCGF3Q3KNV8 242 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 TMEM25Q86YD3 366 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 NUP43Q8NFH3 380 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 KIAA1143Q96AT1 154 aaPredicted RBP13.41□□□□□ -0.26
RTF1-201ENST00000389629 METTL2AQ96IZ6 378 aaKnown RBP13.41□□□□□ -0.26
RTF1-201ENST00000389629 C14orf105Q9NVL8 296 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 EEF1E1-BLOC1S5C9J1V9 151 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 KRBOX1C9JBD0 128 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 F5H5P2 479 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 H3BQ06 376 aaPredicted RBP13.41□□□□□ -0.26
RTF1-201ENST00000389629 SC5DO75845 299 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 SOD2P04179 222 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 ELK1P19419 428 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 HOXA9P31269 272 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 RAB5BP61020 215 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 GBX1Q14549 363 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 IHHQ14623 411 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 USF2Q15853 346 aaPredicted RBP13.41□□□□□ -0.26
RTF1-201ENST00000389629 NLRP8Q86W28 1048 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 BPHLQ86WA6 291 aaPredicted RBP13.41□□□□□ -0.26
RTF1-201ENST00000389629 ZNF740Q8NDX6 193 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 OR4K13Q8NH42 304 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 HAVCR1Q96D42 359 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 LMLNQ96KR4 655 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 FCRL1Q96LA6 429 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 QRSL1Q9H0R6 528 aaKnown RBP13.41□□□□□ -0.26
RTF1-201ENST00000389629 RNF208Q9H0X6 261 aa13.41□□□□□ -0.26
RTF1-201ENST00000389629 METTL8Q9H825 291 aaKnown RBP13.41□□□□□ -0.26
RTF1-201ENST00000389629 SDHAF2Q9NX18 166 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms