RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 FAM87AP0C7U9 286 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 PTAFRP25105 342 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 OPRM1P35372 400 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ZFP36L2P47974 494 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 PIGFQ07326 219 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 PTGR1Q14914 329 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 RTP5Q14D33 572 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF829Q3KNS6 432 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ARCQ7LC44 396 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 OR10A6Q8NH74 314 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 HUS1BQ8NHY5 278 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 IL37Q9NZH6 218 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 EGFL7Q9UHF1 273 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 WBP11Q9Y2W2 641 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 TMEM202A6NGA9 273 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 I6L893 689 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 FAM155BO75949 473 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 SIX3O95343 332 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 PRLP01236 227 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF44P15621 663 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 GNRHRP30968 328 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 POLR2HP52434 150 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ZCWPW2Q504Y3 356 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 JMJD6Q6NYC1 403 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 KCNIP4Q6PIL6 250 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 IRF2BP2Q7Z5L9 587 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 GCNT2Q8N0V5 402 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ACOT4Q8N9L9 421 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF540Q8NDQ6 660 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 RBM15BQ8NDT2 890 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 TMEM185AQ8NFB2 350 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 BPIFB6Q8NFQ5 453 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 DNAJB8Q8NHS0 232 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 C1GALT1C1Q96EU7 318 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 AKR1E2Q96JD6 320 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 NUAK2Q9H093 628 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 XYLT2Q9H1B5 865 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 TP63Q9H3D4 680 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 BATF3Q9NR55 127 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 UBQLN4Q9NRR5 601 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 C14orf119Q9NWQ9 140 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 MED11Q9P086 117 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 CRNNQ9UBG3 495 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 USP22Q9UPT9 525 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 CLIC1O00299 241 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF821O75541 412 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 TMEM225BP0DP42 221 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 C7P10643 843 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 IDH3GP51553 393 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 PSMD7P51665 324 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 MLLT10P55197 1068 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 CDC20Q12834 499 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 C17orf107Q6ZR85 190 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 TMPRSS7Q7RTY8 843 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 TMEM130Q8N3G9 435 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 DEFB108BQ8NET1 73 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 OR52B6Q8NGF0 335 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 TTYH2Q9BSA4 534 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 SEMA6AQ9H2E6 1030 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 ACSS3Q9H6R3 686 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 MARCH7Q9H992 704 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 MKLN1Q9UL63 735 aa8.63□□□□□ -1.03
LIMCH1-202ENST00000381753 STRCQ7RTU9 1775 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 CHRNB1P11230 501 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 SELEP16581 610 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 MAOAP21397 527 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 PRLHRP49683 370 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 BIDP55957 195 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 EIF2S3LQ2VIR3 472 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 BCL2L15Q5TBC7 163 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 FAHD2BQ6P2I3 314 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 HMGN2P46Q86SG4 172 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 TMEM105Q8N8V8 129 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 BRIX1Q8TDN6 353 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 RAB1CQ92928 201 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 FAHD2AQ96GK7 314 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 SGCZQ96LD1 299 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 KLHL13Q9P2N7 655 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 TBC1D29Q9UFV1 150 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 METTL21EPA6NDL7 271 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 SSNA1O43805 119 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 DNAJB1P25685 340 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 TRAM2Q15035 370 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 TATDN3Q17R31 274 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 ZIK1Q3SY52 487 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 VWA5B1Q5TIE3 1220 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 GLYATQ6IB77 296 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 GDPD3Q7L5L3 318 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 GDF7Q7Z4P5 450 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 TPRA1Q86W33 373 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 SARGQ9BW04 601 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 CLMPQ9H6B4 373 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 IL26Q9NPH9 171 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 B3GNT2Q9NY97 397 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 CCDC163A0A0D9SF12 145 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 GPR75O95800 540 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 SERPINA6P08185 405 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 SLC35E2BP0CK96 405 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 ZNF92Q03936 586 aa8.62□□□□□ -1.03
LIMCH1-202ENST00000381753 WDR93Q6P2C0 686 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms