RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 SMAD9O15198 467 aaKnown RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 CLDN9O95484 217 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 ALDOAP04075 364 aaKnown RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 ATP1B1P05026 303 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 IL32P24001 234 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 PSMA4P25789 261 aaKnown RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 EVI2BP34910 448 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 PIK3CBP42338 1070 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 PIK3CGP48736 1102 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 ACTG1P63261 375 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 SLMAPQ14BN4 828 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 MST1LQ2TV78 715 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 MIDNQ504T8 468 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 SULT1C3Q6IMI6 304 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 GRHL2Q6ISB3 625 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 APOOLQ6UXV4 268 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 Q6ZSR9 355 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 MARCH3Q86UD3 253 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 TUSC5Q8IXB3 177 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 MUC15Q8N387 334 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 RNF214Q8ND24 703 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 DUSP19Q8WTR2 217 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 ABHD3Q8WU67 409 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 ZFAND2BQ8WV99 257 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 KAT2AQ92830 837 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 KISS1RQ969F8 398 aaPredicted RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 GFM2Q969S9 779 aaKnown RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 VSTM2LQ96N03 204 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 ZNF681Q96N22 645 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 DHRS9Q9BPW9 319 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 LRRC1Q9BTT6 524 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 HDHD5Q9BXW7 423 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 POTEKPQ9BYX7 375 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 PRRG4Q9BZD6 226 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 BHLHE41Q9C0J9 482 aaPredicted RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 DDX47Q9H0S4 455 aaKnown RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 ZNF696Q9H7X3 374 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 SAYSD1Q9NPB0 183 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 PPANQ9NQ55 473 aaKnown RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 FAIMQ9NVQ4 179 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 PPP4R1LQ9P1A2 415 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 CORO1CQ9ULV4 474 aaPredicted RBP7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 AP4B1Q9Y6B7 739 aa7.48□□□□□ -1.21
HMGB1P39-201ENST00000366304 FAM157AC9JC47 383 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 ADAMDEC1O15204 470 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 PHGDHO43175 533 aaKnown RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 DLX3O60479 287 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 ERAL1O75616 437 aaKnown RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 LYZL6O75951 148 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 FESP07332 822 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 TUBBP07437 444 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 CD1DP15813 335 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 ZNF23P17027 643 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 PTX3P26022 381 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 SERPINB1P30740 379 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 CXCR5P32302 372 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 SRP14P37108 136 aaKnown RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 FABP6P51161 128 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 RPS3AP61247 264 aaKnown RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 DLG1Q12959 904 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 GANABQ14697 944 aaKnown RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 PPA1Q15181 289 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 STK11Q15831 433 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 PDCD2Q16342 344 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 ZSWIM7Q19AV6 140 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 AWAT1Q58HT5 328 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 BHLHA15Q7RTS1 189 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 LRRC70Q7Z2Q7 622 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 STK32CQ86UX6 486 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 CCDC25Q86WR0 208 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 PLD6Q8N2A8 252 aaKnown RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 TCAIMQ8N3R3 496 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 CEP112Q8N8E3 955 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 GBP7Q8N8V2 638 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 GCDHQ92947 438 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 EXT2Q93063 718 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 UBE2E3Q969T4 207 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 CNRIP1Q96F85 164 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 CFAP36Q96G28 342 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 SORCS2Q96PQ0 1159 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 SRXN1Q9BYN0 137 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 TMEM185BQ9H7F4 350 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 CNOT10Q9H9A5 744 aaKnown RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 WDR41Q9HAD4 459 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 NGBQ9NPG2 151 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 CD274Q9NZQ7 290 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 PRSS50Q9UI38 385 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 TMEFF2Q9UIK5 374 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 ING1Q9UK53 422 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 ZNF281Q9Y2X9 895 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 TSC22D4Q9Y3Q8 395 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 PCDHGB1Q9Y5G3 927 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 PCDHA9Q9Y5H5 950 aa7.47□□□□□ -1.21
HMGB1P39-201ENST00000366304 UQCRHLA0A096LP55 91 aa7.46□□□□□ -1.22
HMGB1P39-201ENST00000366304 ESYT3A0FGR9 886 aa7.46□□□□□ -1.22
HMGB1P39-201ENST00000366304 LINC01387J3KSC0 135 aa7.46□□□□□ -1.22
HMGB1P39-201ENST00000366304 EFNA2O43921 213 aa7.46□□□□□ -1.22
HMGB1P39-201ENST00000366304 IPO7O95373 1038 aaKnown RBP7.46□□□□□ -1.22
HMGB1P39-201ENST00000366304 TTC4O95801 387 aa7.46□□□□□ -1.22
HMGB1P39-201ENST00000366304 KLK1P06870 262 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms