RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 AMDHD1Q96NU7 426 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 OR7D2Q96RA2 312 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 MS4A8Q9BY19 250 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 PPIL3Q9H2H8 161 aaKnown RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 SRA1Q9HD15 236 aaKnown RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 THSD1Q9NS62 852 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 RWDD3Q9Y3V2 267 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 FAM86C2PA6NEL3 165 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 INMT-MINDY4F8WBC2 141 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 PPP1R3DO95685 299 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 LATS1O95835 1130 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 CSNK1G2P78368 415 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 OC90Q02509 493 aaPredicted RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 TRAM2Q15035 370 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 ZNF362Q5T0B9 420 aaPredicted RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 SLC36A4Q6YBV0 504 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 TSEN54Q7Z6J9 526 aaKnown RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 SDR9C7Q8NEX9 313 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 OR13C2Q8NGS9 318 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 AP3S1Q92572 193 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 SLC25A36Q96CQ1 311 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 RBM18Q96H35 190 aaKnown RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 MSLNLQ96KJ4 702 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 ZNF582Q96NG8 517 aaPredicted RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 LYSMD1Q96S90 227 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 TTYH1Q9H313 450 aaPredicted RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 CCDC86Q9H6F5 360 aaKnown RBP11.2□□□□□ -0.62
USP1-201ENST00000339950 C11orf49Q9H6J7 331 aa11.2□□□□□ -0.62
USP1-201ENST00000339950 CDC14CA4D256 554 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 PEX12O00623 359 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 AKR7A2O43488 359 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 UGDHO60701 494 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 MAP2K3P46734 347 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 ARL4DP49703 201 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 WNT4P56705 351 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 CRYZQ08257 329 aaKnown RBP11.19□□□□□ -0.62
USP1-201ENST00000339950 DSG2Q14126 1118 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 CCDC58Q4VC31 144 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 ZNF793Q6ZN11 406 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 RFPL4BQ6ZWI9 263 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 OR52E4Q8NGH9 312 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 THAP3Q8WTV1 239 aaPredicted RBP11.19□□□□□ -0.62
USP1-201ENST00000339950 ZNF566Q969W8 418 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 ERMAPQ96PL5 475 aaPredicted RBP11.19□□□□□ -0.62
USP1-201ENST00000339950 TMEM168Q9H0V1 697 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 LMAN2LQ9H0V9 348 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 FBXL4Q9UKA2 621 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 PPIEQ9UNP9 301 aaKnown RBP11.19□□□□□ -0.62
USP1-201ENST00000339950 MAU2Q9Y6X3 613 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 HOXB2P14652 356 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 HIST1H1TP22492 207 aaPredicted RBP11.19□□□□□ -0.62
USP1-201ENST00000339950 TATDN3Q17R31 274 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 FAM174AQ8TBP5 190 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 CNRIP1Q96F85 164 aaPredicted RBP11.19□□□□□ -0.62
USP1-201ENST00000339950 CD180Q99467 661 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 PRSS16Q9NQE7 514 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 HRASLS2Q9NWW9 162 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 RIIAD1A6NNX1 92 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 SGK494L7N484 410 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 PTHLHP12272 177 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 ADH7P40394 386 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 OR10A3P58181 314 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 IRF3Q14653 427 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 AMZ1Q400G9 498 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 FLYWCH1Q4VC44 716 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 PRSS45Q7RTY3 260 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 TMPRSS9Q7Z410 1059 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 PRR22Q8IZ63 422 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 OR52E2Q8NGJ4 325 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 PFN4Q8NHR9 129 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 DEDD2Q8WXF8 326 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 TM9SF4Q92544 642 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 AKAP1Q92667 903 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP1-201ENST00000339950 DPCDQ9BVM2 203 aaPredicted RBP11.19□□□□□ -0.62
USP1-201ENST00000339950 ISG20L2Q9H9L3 353 aaKnown RBP11.19□□□□□ -0.62
USP1-201ENST00000339950 NUDT15Q9NV35 164 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 FBXO34Q9NWN3 711 aa11.19□□□□□ -0.62
USP1-201ENST00000339950 CARNS1A5YM72 827 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 ORC5O43913 435 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 DNAJB6O75190 326 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 DDX6P26196 483 aaKnown RBP eCLIP11.18□□□□□ -0.62
USP1-201ENST00000339950 KCNJ5P48544 419 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 DUSP2Q05923 314 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 AGERQ15109 404 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 HES5Q5TA89 166 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 SHISA6Q6ZSJ9 500 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 OAFQ86UD1 273 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 LINC01555Q8NAE3 123 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 ASB15Q8WXK1 588 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 PDXPQ96GD0 296 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 SLC41A3Q96GZ6 507 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 MRGPRX3Q96LB0 322 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 GSDMCQ9BYG8 508 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 FGF22Q9HCT0 170 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 CD93Q9NPY3 652 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 ASIC5Q9NY37 505 aa11.18□□□□□ -0.62
USP1-201ENST00000339950 AKAP8O43823 692 aaKnown RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 KHDRBS3O75525 346 aaKnown RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 MRPL19P49406 292 aaKnown RBP11.18□□□□□ -0.62
USP1-201ENST00000339950 MAT1AQ00266 395 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms