RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 GRAMD1BQ3KR37 738 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 NHSL2Q5HYW2 709 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 DCST1Q5T197 706 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 FIGNL1Q6PIW4 674 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 ANKRD46Q86W74 232 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 CLEC4FQ8N1N0 589 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 OR56A1Q8NGH5 318 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 OR4C3Q8NH37 302 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 JADE3Q92613 823 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 CDS1Q92903 461 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 C7orf26Q96N11 449 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 OR52B2Q96RD2 323 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 STACQ99469 402 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 ACTRT3Q9BYD9 372 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 OR2B2Q9GZK3 357 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 PIGUQ9H490 435 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 DUSP22Q9NRW4 184 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 FGFR1OP2Q9NVK5 253 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 FAM120CQ9NX05 1096 aaKnown RBP14.39□□□□□ -0.11
CLN3-201ENST00000333496 GIN1Q9NXP7 522 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 PCDHGB3Q9Y5G1 929 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 KCNE3Q9Y6H6 103 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 DOCK7Q96N67 2140 aa14.39□□□□□ -0.11
CLN3-201ENST00000333496 PRSS51A0A1B0GVH4 220 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 CCT8L1PA6NM43 557 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 FIGNL2A6NMB9 653 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 E9PBE3 544 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 WDR1O75083 606 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 DNAJC8O75937 253 aaPredicted RBP14.38□□□□□ -0.11
CLN3-201ENST00000333496 GRNP28799 593 aaKnown RBP14.38□□□□□ -0.11
CLN3-201ENST00000333496 CLNS1AP54105 237 aaKnown RBP14.38□□□□□ -0.11
CLN3-201ENST00000333496 NUP107P57740 925 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 PMPCAQ10713 525 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 FAM174BQ3ZCQ3 159 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 SPDYE7PQ495Y7 208 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 CCNJQ5T5M9 372 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 NXNQ6DKJ4 435 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 MARCH3Q86UD3 253 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 COX18Q8N8Q8 333 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 FADS6Q8N9I5 356 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 ACTRT2Q8TDY3 377 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 MOAP1Q96BY2 351 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 TTYH2Q9BSA4 534 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 UGT2B28Q9BY64 529 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 SERHL2Q9H4I8 314 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 ALKBH4Q9NXW9 302 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 PPP4R1LQ9P1A2 415 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 USH1CQ9Y6N9 552 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 HEATR5AQ86XA9 2040 aa14.38□□□□□ -0.11
CLN3-201ENST00000333496 ZIC3O60481 467 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 OXSR1O95747 527 aaPredicted RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 SRD5A2P31213 254 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 SOAT1P35610 550 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 DGKQP52824 942 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 POU6F2P78424 691 aaPredicted RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 DPY19L1Q2PZI1 675 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 TMEM211Q6ICI0 200 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 EPGNQ6UW88 154 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 B3GNT6Q6ZMB0 384 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 ULK2Q8IYT8 1036 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 OR2M3Q8NG83 312 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 OR5D16Q8NGK9 328 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 DUSP19Q8WTR2 217 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 SDCCAG3Q96C92 435 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 MARK4Q96L34 752 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 BTBD2Q9BX70 525 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 PRDM14Q9GZV8 571 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 DSN1Q9H410 356 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 MED11Q9P086 117 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 MRPS18CQ9Y3D5 142 aaKnown RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 KLF2Q9Y5W3 355 aaPredicted RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 MED12LQ86YW9 2145 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 KDM4EB2RXH2 506 aaPredicted RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 PRSS44E7EML9 344 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 EDF1O60869 148 aaKnown RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 CPSF4O95639 269 aaKnown RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 ANGPTL1O95841 491 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 GLI4P10075 376 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 GABRA1P14867 456 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 ZFP36L2P47974 494 aaKnown RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 GFRA1P56159 465 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 STX5Q13190 355 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 C1orf185Q5T7R7 199 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 ANXA8L1Q5VT79 327 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 FBXW10Q5XX13 1052 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 ZNF787Q6DD87 383 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 C6orf120Q7Z4R8 191 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 OR4A15Q8NGL6 344 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 OR14L1PQ8NHC6 308 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 ADAMTS15Q8TE58 950 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 RND1Q92730 232 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 ABTB1Q969K4 478 aaPredicted RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 WDYHV1Q96HA8 205 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 OR7D2Q96RA2 312 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 TAS2R10Q9NYW0 307 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 FAF1Q9UNN5 650 aaPredicted RBP14.37□□□□□ -0.11
CLN3-201ENST00000333496 RNF6Q9Y252 685 aa14.37□□□□□ -0.11
CLN3-201ENST00000333496 INTS1Q8N201 2190 aaKnown RBP14.36□□□□□ -0.11
CLN3-201ENST00000333496 RNF103-CHMP3A0A140T963 221 aa14.36□□□□□ -0.11
CLN3-201ENST00000333496 ALG1L2C9J202 215 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms