RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 C1DQ13901 141 aaKnown RBP11.13□□□□□ -0.63
SHMT2-201ENST00000328923 PTGES3Q15185 160 aaKnown RBP11.13□□□□□ -0.63
SHMT2-201ENST00000328923 TRAM1Q15629 374 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 TTLL9Q3SXZ7 439 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 RFTN2Q52LD8 501 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-201ENST00000328923 ATAT1Q5SQI0 421 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 CTU1Q7Z7A3 348 aaKnown RBP11.13□□□□□ -0.63
SHMT2-201ENST00000328923 KRTCAP2Q8N6L1 136 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 ZNF614Q8N883 585 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 GPBAR1Q8TDU6 330 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 ACOT11Q8WXI4 607 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-201ENST00000328923 ATG101Q9BSB4 218 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 TMPRSS13Q9BYE2 586 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 PRO1933Q9H354 126 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 MTG2Q9H4K7 406 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 NANSQ9NR45 359 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 NUDT4Q9NZJ9 180 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 CCL27Q9Y4X3 112 aa11.13□□□□□ -0.63
SHMT2-201ENST00000328923 NUP214P35658 2090 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-201ENST00000328923 C2orf78A6NCI8 922 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 C6orf47O95873 294 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 FGF1P05230 155 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ZNF35P13682 527 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 HLA-DPA1P20036 260 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 CTGFP29279 349 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 CNR2P34972 360 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 PURAQ00577 322 aaKnown RBP11.12□□□□□ -0.63
SHMT2-201ENST00000328923 PPIGQ13427 754 aaKnown RBP eCLIP11.12□□□□□ -0.633e-8■□□□□ 10.3
SHMT2-201ENST00000328923 PCBP2Q15366 365 aaKnown RBP eCLIP11.12□□□□□ -0.63
SHMT2-201ENST00000328923 OR52W1Q6IF63 320 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 MZT2AQ6P582 158 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 QSOX2Q6ZRP7 698 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 BCDIN3DQ7Z5W3 292 aaKnown RBP11.12□□□□□ -0.63
SHMT2-201ENST00000328923 CFAP206Q8IYR0 622 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 TEX26Q8N6G2 289 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 OR9Q2Q8NGE9 314 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 OR52B6Q8NGF0 335 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 OR5J2Q8NH18 312 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 OR4K3Q96R72 315 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ZNF559Q9BR84 538 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 DPY30Q9C005 99 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 C20orf85Q9H1P6 137 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 SLC25A19Q9HC21 320 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 NT5MQ9NPB1 228 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 RASL12Q9NYN1 266 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 C17orf102A2RUQ5 167 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 TNFRSF11BO00300 401 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 STK25O00506 426 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 HIST1H2ABP04908 130 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 GIPP09681 153 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ZNF14P17017 642 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-201ENST00000328923 HOXB9P17482 250 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ACHEP22303 614 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 AKAP5P24588 427 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 GNALP38405 381 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ETV5P41161 510 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 FAM189BP81408 668 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 GINS1Q14691 196 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 MBTPS1Q14703 1052 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 OR8G1Q15617 311 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 PLK5Q496M5 336 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ZRANB3Q5FWF4 1079 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 MARC1Q5VT66 337 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 HEPHL1Q6MZM0 1159 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 HIST3H2AQ7L7L0 130 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 GPSM1Q86YR5 675 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 LAS2Q8IYD9 372 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 SYNPOQ8N3V7 929 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ZFP41Q8N8Y5 198 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 HIST1H2ACQ93077 130 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 SMARCD1Q96GM5 515 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ZFP42Q96MM3 310 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 ABHD1Q96SE0 405 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 CSNK1G1Q9HCP0 422 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 NPDC1Q9NQX5 325 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-201ENST00000328923 DNAJB11Q9UBS4 358 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 PIN4Q9Y237 131 aaKnown RBP11.12□□□□□ -0.63
SHMT2-201ENST00000328923 KCTD3Q9Y597 815 aa11.12□□□□□ -0.63
SHMT2-201ENST00000328923 OR2M5A3KFT3 312 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 C5orf58C9J3I9 102 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 RGS14O43566 566 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 SLC19A2O60779 497 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 AQP8O94778 261 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 EIF4EP06730 217 aaKnown RBP11.11□□□□□ -0.63
SHMT2-201ENST00000328923 AKR1A1P14550 325 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 HOXC8P31273 242 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 SLC6A4P31645 630 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 RBM39Q14498 530 aaKnown RBP11.11□□□□□ -0.63
SHMT2-201ENST00000328923 INSL4Q14641 139 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 SLC5A12Q1EHB4 618 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 SDHAF4Q5VUM1 108 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 WSCD1Q658N2 575 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 C16orf54Q6UWD8 224 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 LAPTM4BQ86VI4 370 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 UMODL1-AS1Q8N2C9 162 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 TOMM5Q8N4H5 51 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 ZNF248Q8NDW4 579 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 PROKR2Q8NFJ6 384 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 OR56B4Q8NH76 319 aa11.11□□□□□ -0.63
SHMT2-201ENST00000328923 OR6X1Q8NH79 312 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms