RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ALPPL2P10696 532 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 NPR2P20594 1047 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 PTBP1P26599 531 aaKnown RBP eCLIP12.63□□□□□ -0.39
SKA3-201ENST00000298260 AHRP35869 848 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 CDKN3Q16667 212 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 C2orf68Q2NKX9 166 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 MINDY4Q4G0A6 757 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 MORN1Q5T089 497 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 SLC27A4Q6P1M0 643 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 TPGS1Q6ZTW0 290 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 METTL3Q86U44 580 aaKnown RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 C17orf47Q8NEP4 570 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 ASZ1Q8WWH4 475 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 KAT2AQ92830 837 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 CAPNS2Q96L46 248 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 SLC38A3Q99624 504 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 FAIM2Q9BWQ8 316 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 FXYD6Q9H0Q3 95 aa12.63□□□□□ -0.39
SKA3-201ENST00000298260 ELAC1Q9H777 363 aaKnown RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 POLMQ9NP87 494 aaPredicted RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 ING1Q9UK53 422 aaPredicted RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 EXOSC1Q9Y3B2 195 aaKnown RBP12.63□□□□□ -0.39
SKA3-201ENST00000298260 OR6C75A6NL08 312 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 MCRIP1C9JLW8 97 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 CHST10O43529 356 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 SLC28A2O43868 658 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 SELENOFO60613 162 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 CLDN11O75508 207 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 MRPL3P09001 348 aaKnown RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 RBMS1P29558 406 aaKnown RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 PBLDP30039 288 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 SLC11A2P49281 568 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 ZNF322Q6U7Q0 402 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 CXCL17Q6UXB2 119 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 BTN2A1Q7KYR7 527 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 CAMKMTQ7Z624 323 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 CEACAM19Q7Z692 300 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 KLHL36Q8N4N3 616 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 OR4Q3Q8NH05 313 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 GOT1L1Q8NHS2 421 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 TEX47Q8TBZ9 253 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 BCL7CQ8WUZ0 217 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 SLC25A28Q96A46 364 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 ECHDC3Q96DC8 303 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 DPYSL5Q9BPU6 564 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 WDR26Q9H7D7 661 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 MIEF1Q9NQG6 463 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 PTTG3PQ9NZH4 202 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 LDOC1O95751 146 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 EPPINO95925 133 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 BUD31P41223 144 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 GPR4P46093 362 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 FAM209BQ5JX69 171 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 ELP2Q6IA86 826 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 CRTC1Q6UUV9 634 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 TMEM99Q8N816 258 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 ZDHHC1Q8WTX9 485 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 PDXPQ96GD0 296 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 UBL7Q96S82 380 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 TREX2Q9BQ50 279 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 CCDC86Q9H6F5 360 aaKnown RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 RNF186Q9NXI6 227 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 ZDHHC3Q9NYG2 299 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 STOX2Q9P2F5 926 aaPredicted RBP12.62□□□□□ -0.39
SKA3-201ENST00000298260 SLC45A1Q9Y2W3 748 aa12.62□□□□□ -0.39
SKA3-201ENST00000298260 A0A087WUU8 490 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 OR6C74A6NCV1 312 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 GFYI3L273 518 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 SMAD9O15198 467 aaKnown RBP12.61□□□□□ -0.39
SKA3-201ENST00000298260 REM1O75628 298 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 RGS9O75916 674 aaPredicted RBP12.61□□□□□ -0.39
SKA3-201ENST00000298260 RLN2P04090 185 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 C8GP07360 202 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 FUT1P19526 365 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 POLR2GP62487 172 aaKnown RBP eCLIP12.61□□□□□ -0.39
SKA3-201ENST00000298260 ZFP82Q8N141 532 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 ARSGQ96EG1 525 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 TEFMQ96QE5 360 aaKnown RBP12.61□□□□□ -0.39
SKA3-201ENST00000298260 SEMA4CQ9C0C4 833 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 SLC6A15Q9H2J7 730 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 OR51I1Q9H343 314 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 PRDM9Q9NQV7 894 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 SCN8AQ9UQD0 1980 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 TRAV20A0A0B4J274 112 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 A0A0G2JK05 382 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 SYNDIG1LA6NDD5 238 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 HMGN4O00479 90 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 TBL1XO60907 577 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 EFCAB14O75071 495 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 PEX14O75381 377 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 GDNFP39905 211 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 KCNJ5P48544 419 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 RING1Q06587 406 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 PDSS1Q5T2R2 415 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 PYHIN1Q6K0P9 492 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 RRM2BQ7LG56 351 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 CPOQ8IVL8 374 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 CPXM2Q8N436 756 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 IL17RCQ8NAC3 791 aa12.61□□□□□ -0.39
SKA3-201ENST00000298260 MORN4Q8NDC4 146 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms