RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CDC73Q6P1J9 531 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 SLC48A1Q6P1K1 146 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 C19orf18Q8NEA5 215 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 OR2L5Q8NG80 312 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 OR13C5Q8NGS8 318 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 HCAR2Q8TDS4 363 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 SLC41A3Q96GZ6 507 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 MRPS7Q9Y2R9 242 aaKnown RBP19.91■□□□□ 0.78
TRIM28-201ENST00000253024 TMA7Q9Y2S6 64 aaKnown RBP19.91■□□□□ 0.78
TRIM28-201ENST00000253024 WDR45Q9Y484 360 aa19.91■□□□□ 0.78
TRIM28-201ENST00000253024 TRAV27A0A087WT01 109 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 CPNE3O75131 537 aaKnown RBP19.9■□□□□ 0.78
TRIM28-201ENST00000253024 POLR2CP19387 275 aaPredicted RBP19.9■□□□□ 0.78
TRIM28-201ENST00000253024 PPP2CBP62714 309 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 PPP2CAP67775 309 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 ARHGAP19Q14CB8 494 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 TRAM2Q15035 370 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 DUSP5Q16690 384 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 PLK5Q496M5 336 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 Q5BKY6 102 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 SEC16AO15027 2179 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 A0A0B4J203 849 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 C12orf71A8MTZ7 269 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 H3BSH0 61 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 GABRPO00591 440 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 TSC22D2O75157 780 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 GUCY1B2O75343 617 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 CPN2P22792 545 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 GDI1P31150 447 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 OMPP47874 163 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 KRR1Q13601 381 aaKnown RBP19.9■□□□□ 0.78
TRIM28-201ENST00000253024 RUNX3Q13761 415 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 RPE65Q16518 533 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 GLYR1Q49A26 553 aaPredicted RBP19.9■□□□□ 0.78
TRIM28-201ENST00000253024 TMEM240Q5SV17 173 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 SYCE2Q6PIF2 218 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 TMEM99Q8N816 258 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 ZNF784Q8NCA9 323 aaPredicted RBP19.9■□□□□ 0.78
TRIM28-201ENST00000253024 SPATA5L1Q9BVQ7 753 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 PCBD2Q9H0N5 130 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 HDHD2Q9H0R4 259 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 PPIL3Q9H2H8 161 aaKnown RBP19.9■□□□□ 0.78
TRIM28-201ENST00000253024 VPS13AQ96RL7 3174 aa19.9■□□□□ 0.78
TRIM28-201ENST00000253024 POLR1CO15160 346 aaPredicted RBP19.89■□□□□ 0.78
TRIM28-201ENST00000253024 P2RX6O15547 441 aa19.89■□□□□ 0.78
TRIM28-201ENST00000253024 CDC123O75794 336 aaPredicted RBP19.89■□□□□ 0.78
TRIM28-201ENST00000253024 DRD2P14416 443 aa19.89■□□□□ 0.78
TRIM28-201ENST00000253024 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.89■□□□□ 0.78
TRIM28-201ENST00000253024 GXYLT1Q4G148 440 aa19.89■□□□□ 0.78
TRIM28-201ENST00000253024 DIO2Q92813 273 aa19.89■□□□□ 0.78
TRIM28-201ENST00000253024 SLC22A4Q9H015 551 aa19.89■□□□□ 0.78
TRIM28-201ENST00000253024 PRKAG2Q9UGJ0 569 aa19.89■□□□□ 0.78
TRIM28-201ENST00000253024 GSTK1Q9Y2Q3 226 aa19.89■□□□□ 0.78
TRIM28-201ENST00000253024 GRIP1Q9Y3R0 1128 aa19.89■□□□□ 0.78
TRIM28-201ENST00000253024 LOC105369274A0A096LPK9 316 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 E9PI62 339 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 EMC8O43402 210 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 PLOD3O60568 738 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 CHRNB1P11230 501 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 PEPDP12955 493 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 IGFALSP35858 605 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 ST3GAL3Q11203 375 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 COX10Q12887 443 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 WDR88Q6ZMY6 472 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 OR4N4Q8N0Y3 316 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 ORAI1Q96D31 301 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 SF3B6Q9Y3B4 125 aaKnown RBP19.89■□□□□ 0.77
TRIM28-201ENST00000253024 FAM47E-STBD1D6RA91 191 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 PROM1O43490 865 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 EFCAB14O75071 495 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 SAGP10523 405 aaPredicted RBP19.89■□□□□ 0.77
TRIM28-201ENST00000253024 PUS10Q3MIT2 529 aaKnown RBP19.89■□□□□ 0.77
TRIM28-201ENST00000253024 YAF2Q8IY57 180 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 GNPDA2Q8TDQ7 276 aa19.89■□□□□ 0.77
TRIM28-201ENST00000253024 HNRNPA1P09651 372 aaKnown RBP eCLIP19.88■□□□□ 0.77
TRIM28-201ENST00000253024 PKLRP30613 574 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 ACTR1BP42025 376 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 PPM1FP49593 454 aaPredicted RBP19.88■□□□□ 0.77
TRIM28-201ENST00000253024 ACTR1AP61163 376 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 PLET1Q6UQ28 207 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 NR2C2APQ86WQ0 139 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 ARL14Q8N4G2 192 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 SLC17A9Q9BYT1 436 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 CRISPLD2Q9H0B8 497 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 KLHL28Q9NXS3 571 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 TNFRSF10DQ9UBN6 386 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 NDOR1Q9UHB4 597 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 ACSL5Q9ULC5 683 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 KIF26AQ9ULI4 1882 aaPredicted RBP19.88■□□□□ 0.77
TRIM28-201ENST00000253024 A0A0G2JPF8 293 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 FAM240BA0A1B0GVZ2 78 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 HNRNPCL2B2RXH8 293 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 HNRNPCL3B7ZW38 293 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 HNRNPCL4P0DMR1 293 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 NOS3P29474 1203 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 TSPAN31Q12999 210 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 TATDN3Q17R31 274 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 DEFB110Q30KQ9 67 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 VN1R4Q7Z5H5 301 aa19.88■□□□□ 0.77
TRIM28-201ENST00000253024 PINK1Q9BXM7 581 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms