RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 SDHAF3Q9NRP4 125 aa13.78□□□□□ -0.2
PTPRA-201ENST00000216877 CACNA1CQ13936 2221 aa13.78□□□□□ -0.2
PTPRA-201ENST00000216877 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.77□□□□□ -0.2
PTPRA-201ENST00000216877 FAM183AA6NL82 134 aa13.77□□□□□ -0.2
PTPRA-201ENST00000216877 CPSF4LA6NMK7 179 aaKnown RBP13.77□□□□□ -0.2
PTPRA-201ENST00000216877 ZNF879B4DU55 563 aa13.77□□□□□ -0.2
PTPRA-201ENST00000216877 SLC1A3P43003 542 aa13.77□□□□□ -0.2
PTPRA-201ENST00000216877 OAZ1P54368 228 aa13.77□□□□□ -0.2
PTPRA-201ENST00000216877 RTP2Q5QGT7 225 aa13.77□□□□□ -0.2
PTPRA-201ENST00000216877 CXXC5Q7LFL8 322 aaKnown RBP13.77□□□□□ -0.2
PTPRA-201ENST00000216877 L3MBTL4Q8NA19 623 aa13.77□□□□□ -0.2
PTPRA-201ENST00000216877 LKAAEAR1Q8TD35 194 aa13.77□□□□□ -0.2
PTPRA-201ENST00000216877 ACSS1Q9NUB1 689 aaPredicted RBP13.77□□□□□ -0.2
PTPRA-201ENST00000216877 ING1Q9UK53 422 aaPredicted RBP13.77□□□□□ -0.2
PTPRA-201ENST00000216877 PRG3Q9Y2Y8 225 aaPredicted RBP13.77□□□□□ -0.2
PTPRA-201ENST00000216877 PLEKHM1Q9Y4G2 1056 aa13.77□□□□□ -0.2
PTPRA-201ENST00000216877 GCM2O75603 506 aaPredicted RBP13.77□□□□□ -0.21
PTPRA-201ENST00000216877 SMIM6P0DI80 62 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 HSD3B1P14060 373 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 AMD1P17707 334 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 ZNF528Q3MIS6 628 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 C4orf46Q504U0 113 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 SLC22A10Q63ZE4 541 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 ZNF660Q6AZW8 331 aaPredicted RBP13.77□□□□□ -0.21
PTPRA-201ENST00000216877 HEPHL1Q6MZM0 1159 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 SFXN4Q6P4A7 337 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 GPR142Q7Z601 462 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 SERPINA9Q86WD7 417 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 IL17RCQ8NAC3 791 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 OR10H4Q8NGA5 316 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 OR51M1Q9H341 326 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 RBMS1P29558 406 aaKnown RBP13.77□□□□□ -0.21
PTPRA-201ENST00000216877 THPOP40225 353 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 STAT5AP42229 794 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 XCR1P46094 333 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 ILKQ13418 452 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 HYAL4Q2M3T9 481 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 OR2B11Q5JQS5 317 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 SMARCD3Q6STE5 483 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 LRRTM3Q86VH5 581 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 PLA2G15Q8NCC3 412 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 PAQR8Q8TEZ7 354 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 ZFPM2Q8WW38 1151 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 REEP4Q9H6H4 257 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 CORO2BQ9UQ03 480 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 PCDHB9Q9Y5E1 797 aa13.77□□□□□ -0.21
PTPRA-201ENST00000216877 KANTRA0A1W2PQU2 76 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 MPTX1A8MV57 137 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 PIRO00625 290 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 CHST10O43529 356 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 EFCAB14O75071 495 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 S100A8P05109 93 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 PPIBP23284 216 aaKnown RBP13.76□□□□□ -0.21
PTPRA-201ENST00000216877 PTGER3P43115 390 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 TBX4P57082 545 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 HBA1P69905 142 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 SLC36A2Q495M3 483 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 IER5LQ5T953 404 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 FAM109BQ6ICB4 259 aaPredicted RBP13.76□□□□□ -0.21
PTPRA-201ENST00000216877 SEZ6L2Q6UXD5 910 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 USP53Q70EK8 1073 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 OLIG3Q7RTU3 272 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 TMPRSS11BQ86T26 416 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 AKR7LQ8NHP1 331 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 C14orf79Q96F83 325 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 LRIG1Q96JA1 1093 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 TEFMQ96QE5 360 aaKnown RBP13.76□□□□□ -0.21
PTPRA-201ENST00000216877 VPS29Q9UBQ0 182 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 PTCH2Q9Y6C5 1203 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 A0A0D9SEW6 157 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 A0A1W2PQH9 124 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 STK25O00506 426 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 ICOSLGO75144 302 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 KCNJ5P48544 419 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 MC1RQ01726 317 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 PEA15Q15121 130 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 GPRC6AQ5T6X5 926 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 HBMQ6B0K9 141 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 TMEM71Q6P5X7 295 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 NUDT18Q6ZVK8 323 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 OR4D9Q8NGE8 314 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 ZDHHC12Q96GR4 267 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 LURAP1Q96LR2 239 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 EFCAB7A8K855 629 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 C2orf74A8MZ97 194 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 AGPAT2O15120 278 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 LIMS3P0CW19 117 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 LIMS4P0CW20 117 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 RPL34P49207 117 aaKnown RBP13.76□□□□□ -0.21
PTPRA-201ENST00000216877 PITPNAQ00169 270 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 ADNP2Q6IQ32 1131 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 SLC30A6Q6NXT4 461 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 UBE2R2Q712K3 238 aaPredicted RBP13.76□□□□□ -0.21
PTPRA-201ENST00000216877 LRRTM4Q86VH4 590 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 NR2C2APQ86WQ0 139 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 SNX33Q8WV41 574 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 ACOT11Q8WXI4 607 aaPredicted RBP13.76□□□□□ -0.21
PTPRA-201ENST00000216877 ZFP57Q9NU63 452 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 MARK1Q9P0L2 795 aa13.76□□□□□ -0.21
PTPRA-201ENST00000216877 TRPC4Q9UBN4 977 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms