RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CCR8P51685 355 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 TEKQ02763 1124 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 ERN2Q76MJ5 926 aaKnown RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 PRSS45Q7RTY3 260 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 OR52E1Q8NGJ3 308 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 HMGB4Q8WW32 186 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 PTP4A1Q93096 173 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 FRMD6Q96NE9 622 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 BBS4Q96RK4 519 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 OR2B2Q9GZK3 357 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 MRPL15Q9P015 296 aaKnown RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 TRAV27A0A087WT01 109 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 CCDC182A6NF36 153 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 PRODHO43272 600 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 HOXB6P17509 224 aaKnown RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 HOXD10P28358 340 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 TPBGQ13641 420 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 FAM46CQ5VWP2 391 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 GDF7Q7Z4P5 450 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 VWA5B2Q8N398 1253 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 MTERF3Q96E29 417 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 PRRC1Q96M27 445 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 AIF1LQ9BQI0 150 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 GPBP1L1Q9HC44 474 aaPredicted RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 WASH6PQ9NQA3 447 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 CLCA2Q9UQC9 943 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 PCDH15Q96QU1 1955 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 HIST1H1TP22492 207 aaPredicted RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 PPP1CAP62136 330 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 SCN1BQ07699 218 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 GPR68Q15743 365 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 TMEM255AQ5JRV8 349 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 KRT78Q8N1N4 520 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 LINC00615Q96LM1 132 aaPredicted RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 ZNF681Q96N22 645 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 KLHDC3Q9BQ90 382 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 IL21RQ9HBE5 538 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 STARD5Q9NSY2 213 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 HMX3A6NHT5 357 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 C12orf71A8MTZ7 269 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 IL1AP01583 271 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 KELP23276 732 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 ATP5A1P25705 553 aaKnown RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 THBS2P35442 1172 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 VEGFBP49765 207 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 PRDX1Q06830 199 aaKnown RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 IDNKQ5T6J7 187 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 FAM205BPQ63HN1 556 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 ABHD17CQ6PCB6 329 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 DGAT2L6Q6ZPD8 337 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 IKBIPQ70UQ0 350 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 KISS1RQ969F8 398 aaPredicted RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 TRPV4Q9HBA0 871 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 NEUROD4Q9HD90 331 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 ACOXLQ9NUZ1 547 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 MRPS23Q9Y3D9 190 aaKnown RBP9.97□□□□□ -0.81
USP28-201ENST00000003302 BOD1L1Q8NFC6 3051 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 TBC1D3BA6NDS4 549 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 C17orf51A8MQB3 221 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 CHST10O43529 356 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 NGFRP08138 427 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 ANKRD34CP0C6C1 535 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 HOXD11P31277 338 aaPredicted RBP9.96□□□□□ -0.81
USP28-201ENST00000003302 EVX1P49640 407 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 ZNF136P52737 540 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 SMSP52788 366 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 DUSP5Q16690 384 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 HYAL4Q2M3T9 481 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 DDI2Q5TDH0 399 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 CD200R1LQ6Q8B3 271 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 FRRS1Q6ZNA5 592 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 VN1R4Q7Z5H5 301 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 OR4E2Q8NGC2 313 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 SPPL3Q8TCT6 385 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 RGMAQ96B86 450 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 ELP4Q96EB1 424 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 SNX18Q96RF0 628 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 ZNF607Q96SK3 696 aa9.96□□□□□ -0.81
USP28-201ENST00000003302 POM121BA6NF01 834 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 IRF4Q15306 451 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 NDUFAF6Q330K2 333 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 BCL2L15Q5TBC7 163 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 AGBL4Q5VU57 503 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 MEDAGQ5VYS4 303 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 FIGNL1Q6PIW4 674 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 ZNF761Q86XN6 746 aaPredicted RBP9.96□□□□□ -0.82
USP28-201ENST00000003302 NUP43Q8NFH3 380 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 OR51A7Q8NH64 312 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 CLIP3Q96DZ5 547 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 PRSS27Q9BQR3 290 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 PLA2G2FQ9BZM2 168 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 FN3KQ9H479 309 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 FANCMQ8IYD8 2048 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 CABIN1Q9Y6J0 2220 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 LOC105369274A0A096LPK9 316 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 CIB4A0PJX0 185 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 FCER2P06734 321 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 CD3GP09693 182 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 MYL12AP19105 171 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 SLC16A1P53985 500 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms