RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ARMC3Q5W041 872 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 B3GLCTQ6Y288 498 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 BNIPLQ7Z465 357 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 ZNF100Q8IYN0 542 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 ALLCQ8N6M5 410 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 OR2A12Q8NGT7 310 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 TAF4BQ92750 862 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 BCL2L2Q92843 193 aaPredicted RBP2.21□□□□□ -2.06
CD44-239ENST00000639002 PSMG2Q969U7 264 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 FGGYQ96C11 551 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 CHRDL1Q9BU40 450 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 COPS7BQ9H9Q2 264 aaPredicted RBP2.21□□□□□ -2.06
CD44-239ENST00000639002 MMP26Q9NRE1 261 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 NOL7Q9UMY1 257 aaKnown RBP2.21□□□□□ -2.06
CD44-239ENST00000639002 PLEKHG1Q9ULL1 1385 aa2.21□□□□□ -2.06
CD44-239ENST00000639002 SCN2AQ99250 2005 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 ZMYM6O95789 1325 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 A0A1W2PRQ8 180 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 FAM166BA8MTA8 275 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 IGHV3-48P01763 117 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 CD5P06127 495 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 IGFBP1P08833 259 aaPredicted RBP2.2□□□□□ -2.06
CD44-239ENST00000639002 IGLL1P15814 213 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 CTNNB1P35222 781 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 STX1BP61266 288 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 PAX5Q02548 391 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 PTGES3Q15185 160 aaKnown RBP2.2□□□□□ -2.06
CD44-239ENST00000639002 FUT11Q495W5 492 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 HECTD3Q5T447 861 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 C11orf88Q6PI97 169 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 CWC27Q6UX04 472 aaKnown RBP2.2□□□□□ -2.06
CD44-239ENST00000639002 ANKRD23Q86SG2 305 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 AMZ2Q86W34 360 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 MLKLQ8NB16 471 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 MCHR2Q969V1 340 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 TMEM45BQ96B21 275 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 CCDC51Q96ER9 411 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 VPS39Q96JC1 886 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 MRPL9Q9BYD2 267 aaKnown RBP2.2□□□□□ -2.06
CD44-239ENST00000639002 VCXQ9H320 206 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 PIGVQ9NUD9 493 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 SPRR3Q9UBC9 169 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 SLIT3O75094 1523 aa2.2□□□□□ -2.06
CD44-239ENST00000639002 PSMB11A5LHX3 300 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 DLGAP1O14490 977 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 IMPA2O14732 288 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 OR8U8P0C7N1 319 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 HTR1EP28566 365 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 NSFP46459 744 aaKnown RBP2.19□□□□□ -2.06
CD44-239ENST00000639002 PITPNBP48739 271 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 LIM2P55344 173 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 TIMM10P62072 90 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 MRPS11P82912 194 aaKnown RBP2.19□□□□□ -2.06
CD44-239ENST00000639002 C16orf72Q14CZ0 275 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 AANATQ16613 207 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 IFI44LQ53G44 452 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 FAM120AOSQ5T036 256 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 STAC2Q6ZMT1 411 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 ZFP2Q6ZN57 461 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 CCDC91Q7Z6B0 441 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 PEX5LQ8IYB4 626 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 VMP1Q96GC9 406 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 TMEM80Q96HE8 168 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 TSPAN18Q96SJ8 248 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 RSPO3Q9BXY4 272 aaPredicted RBP2.19□□□□□ -2.06
CD44-239ENST00000639002 RSPH9Q9H1X1 276 aaPredicted RBP2.19□□□□□ -2.06
CD44-239ENST00000639002 AKIRIN1Q9H9L7 192 aaPredicted RBP2.19□□□□□ -2.06
CD44-239ENST00000639002 ARGLU1Q9NWB6 273 aaPredicted RBP2.19□□□□□ -2.06
CD44-239ENST00000639002 CD274Q9NZQ7 290 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 OR1A1Q9P1Q5 309 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 LRP4O75096 1905 aa2.19□□□□□ -2.06
CD44-239ENST00000639002 GRIN2DO15399 1336 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 TM9SF1O15321 606 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 NPIPB7O75200 414 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 ANP32DO95626 131 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 RCC1P18754 421 aaPredicted RBP2.18□□□□□ -2.06
CD44-239ENST00000639002 VDAC1P21796 283 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 HOXD10P28358 340 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 TNNT3P45378 269 aaPredicted RBP2.18□□□□□ -2.06
CD44-239ENST00000639002 CCL11P51671 97 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 NME5P56597 212 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 NOP14P78316 857 aaKnown RBP2.18□□□□□ -2.06
CD44-239ENST00000639002 ROR1Q01973 937 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 CMPK2Q5EBM0 449 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 TMEM270Q6UE05 265 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 Q7L0L9 218 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 KRT77Q7Z794 578 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 CCDC36Q8IYA8 594 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 ANKRD49Q8WVL7 239 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 JAKMIP1Q96N16 626 aaKnown RBP2.18□□□□□ -2.06
CD44-239ENST00000639002 MBOAT4Q96T53 435 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 TXN2Q99757 166 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 CARD6Q9BX69 1037 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 FAM124BQ9H5Z6 455 aaPredicted RBP2.18□□□□□ -2.06
CD44-239ENST00000639002 APMAPQ9HDC9 416 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 NANSQ9NR45 359 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 ANKMY1Q9P2S6 941 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 STX8Q9UNK0 236 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 SCML2Q9UQR0 700 aa2.18□□□□□ -2.06
CD44-239ENST00000639002 COL1A2P08123 1366 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms