RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 DNASE1L3Q13609 305 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 CDNFQ49AH0 187 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 UNC50Q53HI1 259 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 OGFOD2Q6N063 350 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 ZC3H10Q96K80 434 aaKnown RBP19.33■□□□□ 0.68
UPF1-207ENST00000599848 SLC30A2Q9BRI3 323 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 TMEM100Q9NV29 134 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 NKX6-3A6NJ46 265 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 GGT5P36269 586 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 AQP4P55087 323 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 ZNF423Q2M1K9 1284 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 ZBTB46Q86UZ6 589 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 FOXRED1Q96CU9 486 aaPredicted RBP19.33■□□□□ 0.68
UPF1-207ENST00000599848 SENP5Q96HI0 755 aaPredicted RBP19.33■□□□□ 0.68
UPF1-207ENST00000599848 MS4A4AQ96JQ5 239 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 ZNF226Q9NYT6 803 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 PLATP00750 562 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 WBP2NLQ6ICG8 309 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 SLC45A3Q96JT2 553 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 RLIMQ9NVW2 624 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 TIMP2P16035 220 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 EIF1P41567 113 aaKnown RBP19.32■□□□□ 0.68
UPF1-207ENST00000599848 ART1P52961 327 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 RAB38P57729 211 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 OR4N2Q8NGD1 307 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 HDAC8Q9BY41 377 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 OBP2BQ9NPH6 170 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 ERVK-19Q9WJR5 959 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 LRRC30A6NM36 301 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 ELSPBP1Q96BH3 223 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 TMEM168Q9H0V1 697 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 TREM1Q9NP99 234 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 CBLCQ9ULV8 474 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 SFTPBP07988 381 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 C19orf47Q8N9M1 422 aaKnown RBP19.32■□□□□ 0.68
UPF1-207ENST00000599848 RNF128Q8TEB7 428 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 L3HYPDHQ96EM0 354 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 BTBD2Q9BX70 525 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 PDLIM7Q9NR12 457 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 LOC100509620A0A075B734 347 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 OTOL1A6NHN0 477 aaPredicted RBP19.32■□□□□ 0.68
UPF1-207ENST00000599848 GABRR3A8MPY1 467 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 FKBP2P26885 142 aaKnown RBP19.32■□□□□ 0.68
UPF1-207ENST00000599848 CERS1P27544 350 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 WDR4P57081 412 aaKnown RBP19.32■□□□□ 0.68
UPF1-207ENST00000599848 GPR176Q14439 515 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 RABL3Q5HYI8 236 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 SLC22A16Q86VW1 577 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 C7orf50Q9BRJ6 194 aaKnown RBP19.32■□□□□ 0.68
UPF1-207ENST00000599848 ULBP2Q9BZM5 246 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 ACOT13Q9NPJ3 140 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 REV1Q9UBZ9 1251 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 PRELID3BQ9Y3B1 194 aa19.32■□□□□ 0.68
UPF1-207ENST00000599848 SGK494L7N484 410 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 SLC5A2P31639 672 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 STEAP4Q687X5 459 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 OR5AK2Q8NH90 309 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 TMEM40Q8WWA1 233 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 B3GNT2Q9NY97 397 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 EIF1BO60739 113 aaKnown RBP19.31■□□□□ 0.68
UPF1-207ENST00000599848 GPR75O95800 540 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 RAB3AP20336 220 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 PLEKHO2Q8TD55 490 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 RLN3Q8WXF3 142 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 ZNF587Q96SQ5 575 aaPredicted RBP19.31■□□□□ 0.68
UPF1-207ENST00000599848 EGLN1Q9GZT9 426 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 DMRT3Q9NQL9 472 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 C1GALT1Q9NS00 363 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 SLC7A8Q9UHI5 535 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 NPIPB15A6NHN6 443 aaPredicted RBP19.31■□□□□ 0.68
UPF1-207ENST00000599848 AGAP5A6NIR3 686 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 ADH6P28332 368 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 AGTR1P30556 359 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 OR1E2P47887 323 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 SLC35A1P78382 337 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 EIF2B1Q14232 305 aaKnown RBP19.31■□□□□ 0.68
UPF1-207ENST00000599848 ZNF404Q494X3 552 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 NDNFQ8TB73 568 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 TLCD2A6NGC4 264 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 CNOT4O95628 575 aaKnown RBP19.31■□□□□ 0.68
UPF1-207ENST00000599848 LGALS4P56470 323 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 HTRA3P83110 453 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 MPP2Q14168 576 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 NTRK2Q16620 822 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 ZNF773Q6PK81 442 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 PIGQQ9BRB3 760 aa19.31■□□□□ 0.68
UPF1-207ENST00000599848 DNMT3BQ9UBC3 853 aaKnown RBP19.31■□□□□ 0.68
UPF1-207ENST00000599848 RNF212BA8MTL3 300 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 RNASET2O00584 256 aaKnown RBP19.3■□□□□ 0.68
UPF1-207ENST00000599848 XPNPEP2O43895 674 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 PRLHRP49683 370 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 TREX2Q9BQ50 279 aaPredicted RBP19.3■□□□□ 0.68
UPF1-207ENST00000599848 OLFM2O95897 454 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 TAZQ16635 292 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 ADIPOR2Q86V24 386 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 ACOT4Q8N9L9 421 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 ZNF417Q8TAU3 575 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 UPRTQ96BW1 309 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 IL26Q9NPH9 171 aa19.3■□□□□ 0.68
UPF1-207ENST00000599848 PMF1-BGLAPU3KQ54 211 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms