RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 C3AR1Q16581 482 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 MTFR2Q6P444 385 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 FIGNL1Q6PIW4 674 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 FGD2Q7Z6J4 655 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 FJX1Q86VR8 437 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 CHERPQ8IWX8 916 aaKnown RBP13.72□□□□□ -0.21
UPF1-202ENST00000594243 WDSUB1Q8N9V3 476 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 CDS1Q92903 461 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 SARAFQ96BY9 339 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 OR7D2Q96RA2 312 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 TBL1XR1Q9BZK7 514 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 UBQLN3Q9H347 655 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 RMND5AQ9H871 391 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 NPHS2Q9NP85 383 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 SUCOQ9UBS9 1254 aaKnown RBP13.72□□□□□ -0.21
UPF1-202ENST00000594243 SH3BGRL2Q9UJC5 107 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 CNTRLQ7Z7A1 2325 aa13.72□□□□□ -0.21
UPF1-202ENST00000594243 LRRK2Q5S007 2527 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 FAM234BA2RU67 622 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 CCDC154A6NI56 674 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 C9JVG2 144 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 NPIPA2E9PIF3 369 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 NPIPA3F8WFD2 350 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 AGR2O95994 175 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 TPOP07202 933 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 ESRRAP11474 423 aaPredicted RBP13.71□□□□□ -0.21
UPF1-202ENST00000594243 HPGDP15428 266 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 ATP6V1C1P21283 382 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 TBXA2RP21731 343 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 CHI3L1P36222 383 aaPredicted RBP13.71□□□□□ -0.21
UPF1-202ENST00000594243 GAS1P54826 345 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 C17orf67Q0P5P2 114 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 ZNF621Q6ZSS3 439 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 MSANTD1Q6ZTZ1 278 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 DOLPP1Q86YN1 238 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 CLEC4FQ8N1N0 589 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 NEIL3Q8TAT5 605 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 MIPOL1Q8TD10 442 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 THOC1Q96FV9 657 aaKnown RBP13.71□□□□□ -0.21
UPF1-202ENST00000594243 OTUB1Q96FW1 271 aaPredicted RBP13.71□□□□□ -0.21
UPF1-202ENST00000594243 SLC35G5Q96KT7 338 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 SLC35A5Q9BS91 424 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 HOXD1Q9GZZ0 328 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 UBQLN4Q9NRR5 601 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 EXD2Q9NVH0 621 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 TMEM45AQ9NWC5 275 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 PPP4R1LQ9P1A2 415 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 TINAGQ9UJW2 476 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 TRIM33Q9UPN9 1127 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 LIPGQ9Y5X9 500 aa13.71□□□□□ -0.21
UPF1-202ENST00000594243 WIPF3A6NGB9 483 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 RFXANKO14593 260 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 ZNHIT1O43257 154 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 SCO2O43819 266 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 ANP32DO95626 131 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 AK1P00568 194 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 NGFRP08138 427 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 VIMP08670 466 aaKnown RBP13.7□□□□□ -0.22
UPF1-202ENST00000594243 TROVE2P10155 538 aaKnown RBP eCLIP13.7□□□□□ -0.22
UPF1-202ENST00000594243 GCKP35557 465 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 ZFP36L2P47974 494 aaKnown RBP13.7□□□□□ -0.22
UPF1-202ENST00000594243 ATP4BP51164 291 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 GUCY1A3Q02108 690 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 GRAMD1BQ3KR37 738 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 GXYLT1Q4G148 440 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 DCST2Q5T1A1 773 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 WLSQ5T9L3 541 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 METTL21CQ5VZV1 264 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 SAXO2Q658L1 398 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 GALNT10Q86SR1 603 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 OR5D16Q8NGK9 328 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 OR4C3Q8NH37 302 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 NEURL3Q96EH8 262 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 ITCHQ96J02 903 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 TP63Q9H3D4 680 aaPredicted RBP13.7□□□□□ -0.22
UPF1-202ENST00000594243 RABEP2Q9H5N1 569 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 CCDC134Q9H6E4 229 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 SERHLQ9NQF3 203 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 FLRT3Q9NZU0 649 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 DCTN4Q9UJW0 460 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 ACAD8Q9UKU7 415 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 MRPS18CQ9Y3D5 142 aaKnown RBP13.7□□□□□ -0.22
UPF1-202ENST00000594243 EML6Q6ZMW3 1958 aa13.7□□□□□ -0.22
UPF1-202ENST00000594243 EXPH5Q8NEV8 1989 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 A0A0G2JND7 137 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 ALG1L2C9J202 215 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 E9PLN8 166 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 SCDO00767 359 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 NDUFB5O43674 189 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 OXSR1O95747 527 aaPredicted RBP13.69□□□□□ -0.22
UPF1-202ENST00000594243 ANGPTL1O95841 491 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 LDLRP01130 860 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 NCF2P19878 526 aaPredicted RBP13.69□□□□□ -0.22
UPF1-202ENST00000594243 MDH1P40925 334 aaKnown RBP13.69□□□□□ -0.22
UPF1-202ENST00000594243 TRPC1P48995 793 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 ANXA11P50995 505 aaKnown RBP13.69□□□□□ -0.22
UPF1-202ENST00000594243 TXNL4AP83876 142 aaKnown RBP13.69□□□□□ -0.22
UPF1-202ENST00000594243 SQLEQ14534 574 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 ARHGAP11BQ3KRB8 267 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 CCNJQ5T5M9 372 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms