RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ZNF140P52738 457 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 EPHA4P54764 986 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 RHAGQ02094 409 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 RGS1Q08116 209 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 NPRL3Q12980 569 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 MAB21L1Q13394 359 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 EIF4EBP2Q13542 120 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 RIN1Q13671 783 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 TAB1Q15750 504 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ZNF79Q15937 498 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PCSK7Q16549 785 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 SMN1Q16637 294 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 SYT16Q17RD7 645 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 BTBD16Q32M84 506 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 FAM174BQ3ZCQ3 159 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 Q5BKY6 102 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CARD16Q5EG05 197 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 SIRPB2Q5JXA9 342 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 Q5PR19 223 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 LCN1P1Q5VSP4 162 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ANKRD34AQ69YU3 496 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ALG1LQ6GMV1 187 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 OR4F3Q6IEY1 312 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 TMPRSS11AQ6ZMR5 421 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 DPY19L3Q6ZPD9 716 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 Q6ZS92 163 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 Q6ZSR9 355 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 FAM92BQ6ZTR7 304 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CBLL1Q75N03 491 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 EIF3MQ7L2H7 374 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 TAF8Q7Z7C8 310 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 GALNT5Q7Z7M9 940 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 GPSM1Q86YR5 675 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CCDC71Q8IV32 467 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 RASGRP3Q8IV61 690 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 RAVER1Q8IY67 606 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 ZZZ3Q8IYH5 903 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CADM2Q8N3J6 435 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 RYBPQ8N488 228 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 STX19Q8N4C7 294 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CLDN22Q8N7P3 220 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 BCORP1Q8N888 145 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ATG16L2Q8NAA4 619 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ACBD4Q8NC06 268 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ZMIZ2Q8NF64 920 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 OR4D9Q8NGE8 314 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 OR6P1Q8NGX9 317 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 OR10A6Q8NH74 314 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CA5BP1Q8WTZ4 195 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 DNAJA4Q8WW22 397 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 TM9SF4Q92544 642 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 KCNJ9Q92806 393 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 FAM131CQ96AQ9 280 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 SH3KBP1Q96B97 665 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 TESCQ96BS2 214 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 COQ8BQ96D53 544 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 MBD6Q96DN6 1003 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ITCHQ96J02 903 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 TBATAQ96M53 351 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 DMRTB1Q96MA1 342 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 Q96MF0 132 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 Q96MT0 163 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 SECISBP2Q96T21 854 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 CHCHD6Q9BRQ6 235 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CENPOQ9BU64 300 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 THUMPD3Q9BV44 507 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 SLC17A9Q9BYT1 436 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 DPY30Q9C005 99 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 SLC39A8Q9C0K1 460 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ROGDIQ9GZN7 287 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 KCNN2Q9H2S1 579 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CLEC4MQ9H2X3 399 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 DPEP2Q9H4A9 486 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 FAM83DQ9H4H8 585 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 IKZF5Q9H5V7 419 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PIF1Q9H611 641 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 WDCPQ9H6R7 721 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 RNF121Q9H920 327 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 NMUR1Q9HB89 426 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CSNK1G1Q9HCP0 422 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 RANGRFQ9HD47 186 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 ING3Q9NXR8 418 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 IL20Q9NYY1 176 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 SLC25A37Q9NYZ2 338 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PDP1Q9P0J1 537 aaPredicted RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 C5AR2Q9P296 337 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ZNF225Q9UK10 706 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 UTS2RQ9UKP6 389 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ABCG2Q9UNQ0 655 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 CORO2BQ9UQ03 480 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 PADI2Q9Y2J8 665 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 KLHL20Q9Y2M5 609 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 SAMHD1Q9Y3Z3 626 aaKnown RBP3.89□□□□□ -1.79
LIG3-211ENST00000588713 SPEF1Q9Y4P9 236 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 ASB4Q9Y574 426 aa3.89□□□□□ -1.79
LIG3-211ENST00000588713 A0A0B4J293 547 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 UBA6A0AVT1 1052 aaPredicted RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 A8MV72 311 aaPredicted RBP3.88□□□□□ -1.79
LIG3-211ENST00000588713 LEUTXA8MZ59 168 aa3.88□□□□□ -1.79
LIG3-211ENST00000588713 HHLA1C9JL84 531 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms