RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	CBR3	O75828	277 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	NKX2-2	O95096	273 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	HOXD4	P09016	255 aa	Predicted RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	ACP2	P11117	423 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	CD99	P14209	185 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	BMP7	P18075	431 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	PRPS1L1	P21108	318 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	GABRA3	P34903	492 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	ADH7	P40394	386 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	MAGOH	P61326	146 aa	Known RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	MAD2L1	Q13257	205 aa	Predicted RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	ACSF3	Q4G176	576 aa	Predicted RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	CPTP	Q5TA50	214 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	HHAT	Q5VTY9	493 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	SEM1	Q6ZVN7	128 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	SZRD1	Q7Z422	152 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	CAMKMT	Q7Z624	323 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	YRDC	Q86U90	279 aa	Known RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	KIRREL3	Q8IZU9	778 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	CDRT4	Q8N9R6	151 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	LILRB4	Q8NHJ6	448 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	CEP70	Q8NHQ1	597 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	PIK3R3	Q92569	461 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	COQ8B	Q96D53	544 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	RMND5B	Q96G75	393 aa	Predicted RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	PPP1R36	Q96LQ0	422 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	PAIP2	Q9BPZ3	127 aa	Known RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	UGT2B28	Q9BY64	529 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	RTN4R	Q9BZR6	473 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	FAM120C	Q9NX05	1096 aa	Known RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760		Q9UFV3	132 aa		12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760	EIF3L	Q9Y262	564 aa	Known RBP	12.1	□□□□□ -0.47
SREBF1-223	ENST00000584760		A0A1W2PRB8	838 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	KDM4E	B2RXH2	506 aa	Predicted RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	EMC8	O43402	210 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	SNN	O75324	88 aa	Predicted RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	ACTL6A	O96019	429 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	IGKV1D-16	P01601	117 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	HOXB4	P17483	251 aa	Predicted RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	SRD5A2	P31213	254 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	PRKAG1	P54619	331 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	PSMD4	P55036	377 aa	Known RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	CLDN8	P56748	225 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	PRR5	P85299	388 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	TFF3	Q07654	80 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	CASP8	Q14790	479 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	DUSP5	Q16690	384 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	OR5M10	Q6IEU7	315 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	ZCCHC12	Q6PEW1	402 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	PM20D2	Q8IYS1	436 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	LRRC34	Q8IZ02	419 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	NATD1	Q8N6N6	113 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	FADS6	Q8N9I5	356 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	SLC16A11	Q8NCK7	471 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	FBXO30	Q8TB52	745 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	MGARP	Q8TDB4	240 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	GPR151	Q8TDV0	419 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	OR5P2	Q8WZ92	322 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	ABTB1	Q969K4	478 aa	Predicted RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	TREX2	Q9BQ50	279 aa	Predicted RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	NUF2	Q9BZD4	464 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	BHLHE41	Q9C0J9	482 aa	Predicted RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	CXorf36	Q9H7Y0	433 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	MEAF6	Q9HAF1	191 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	C3orf14	Q9HBI5	128 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	NEUROD4	Q9HD90	331 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	NPDC1	Q9NQX5	325 aa	Predicted RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	ZCCHC3	Q9NUD5	404 aa	Known RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	ATAD3A	Q9NVI7	634 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	PNPO	Q9NVS9	261 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	ALKBH4	Q9NXW9	302 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	PPP4R1L	Q9P1A2	415 aa		12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	MRTO4	Q9UKD2	239 aa	Known RBP	12.09	□□□□□ -0.47
SREBF1-223	ENST00000584760	MED12L	Q86YW9	2145 aa		12.08	□□□□□ -0.47
SREBF1-223	ENST00000584760	FAM90A27P	A6NNH2	459 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	AHRR	A9YTQ3	701 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	ANKRD28	O15084	1053 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	TOX	O94900	526 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	KCNH1	O95259	989 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	UTS2	O95399	124 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	C6orf47	O95873	294 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	IGFBP2	P18065	325 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	RFX3	P48380	749 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	DIO3	P55073	304 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	GFRA1	P56159	465 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	LASP1	Q14847	261 aa	Known RBP	12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	VPS26B	Q4G0F5	336 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	RIPPLY2	Q5TAB7	128 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	IFNE	Q86WN2	208 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	OR2M3	Q8NG83	312 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	OR14L1P	Q8NHC6	308 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	FAM110B	Q8TC76	370 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	SLC9A6	Q92581	669 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	OTUB1	Q96FW1	271 aa	Predicted RBP	12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	C16orf58	Q96GQ5	468 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	WDYHV1	Q96HA8	205 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	PRPF18	Q99633	342 aa	Known RBP	12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	DUSP26	Q9BV47	211 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	TAS2R10	Q9NYW0	307 aa		12.08	□□□□□ -0.48
SREBF1-223	ENST00000584760	MRPS18C	Q9Y3D5	142 aa	Known RBP	12.08	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms