RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 KDM4EB2RXH2 506 aaPredicted RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 LOC110117498-PIK3R3F6TDL0 507 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 OR5F1O95221 314 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 CPMP14384 443 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 ALOX12P18054 663 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 MYL12AP19105 171 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 POLR2CP19387 275 aaPredicted RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 FPR3P25089 353 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 STAT5AP42229 794 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 WNT4P56705 351 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 BNC1Q01954 994 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 SFSWAPQ12872 951 aaKnown RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 HTR4Q13639 388 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 GPR18Q14330 331 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 DUSP5Q16690 384 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 ALG11Q2TAA5 492 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 MINDY4Q4G0A6 757 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 FLYWCH1Q4VC44 716 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 KIAA1324Q6UXG2 1013 aaKnown RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 PLEKHM3Q6ZWE6 761 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 GDF7Q7Z4P5 450 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 PEX5LQ8IYB4 626 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 ZBTB8BQ8NAP8 495 aaPredicted RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 CAMKVQ8NCB2 501 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 PIK3R3Q92569 461 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 RNFT2Q96EX2 444 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 SLC41A3Q96GZ6 507 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 RIPOR3Q96MK2 946 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 PRRG3Q9BZD7 231 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 SLC28A3Q9HAS3 691 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 TMEM74BQ9NUR3 256 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 IL20Q9NYY1 176 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 CARD8Q9Y2G2 431 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 GPR52Q9Y2T5 361 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 WDR45Q9Y484 360 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 XIRP2A4UGR9 3374 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 GOLGA4Q13439 2230 aaKnown RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 LOC105369274A0A096LPK9 316 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 LOC102723532A0A0G2JNH3 316 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 TMEM129A0AVI4 362 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 KLF4O43474 513 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 PTTG1O95997 202 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 ZNF10P21506 573 aaPredicted RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 TNFSF8P32971 234 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 MTNR1AP48039 350 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 RORCP51449 518 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 YPEL5P62699 121 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 MRPS21P82921 87 aaKnown RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 DUSP8Q13202 625 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 LARS2Q15031 903 aaKnown RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 ZNF628Q5EBL2 1059 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 CLEC12AQ5QGZ9 265 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 MBOAT2Q6ZWT7 520 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 ABHD13Q7L211 337 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 OR4N4Q8N0Y3 316 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 TOR1AIP2Q8NFQ8 470 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 OR10G6Q8NH81 332 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 HTRA1Q92743 480 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 OSTF1Q92882 214 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 SDF2Q99470 211 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 SDHCQ99643 169 aaPredicted RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 SLC30A2Q9BRI3 323 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 CAPN10Q9HC96 672 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 SMURF1Q9HCE7 757 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 ZNF304Q9HCX3 659 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 MSRAQ9UJ68 235 aa9.41□□□□□ -0.9
VPS53-220ENST00000576149 CAB39Q9Y376 341 aaPredicted RBP9.41□□□□□ -0.9
VPS53-220ENST00000576149 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 AQP9O43315 295 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 GNSP15586 552 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 NDUFV2P19404 249 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 DRD1P21728 446 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 TPMTP51580 245 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 EEF1A1P68104 462 aaKnown RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 CBX3Q13185 183 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 TRMT12Q53H54 448 aaKnown RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 TMEM31Q5JXX7 168 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 EXOSC6Q5RKV6 272 aaKnown RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 FHL5Q5TD97 284 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 TMEM92Q6UXU6 159 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 ZNF836Q6ZNA1 936 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 NRMQ8IXM6 262 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 POGLUT1Q8NBL1 392 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 OR4Q3Q8NH05 313 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 CEP19Q96LK0 163 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 ZFYVE21Q9BQ24 234 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 CCDC32Q9BV29 185 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 PIGUQ9H490 435 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 LYRM4Q9HD34 91 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 ISYNA1Q9NPH2 558 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 SNTG1Q9NSN8 517 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 TXNL4BQ9NX01 149 aaKnown RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 C19orf53Q9UNZ5 99 aaPredicted RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 TRAPPC4Q9Y296 219 aa9.4□□□□□ -0.9
VPS53-220ENST00000576149 EXOSC1Q9Y3B2 195 aaKnown RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 SPIN1Q9Y657 262 aaPredicted RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 MN1Q10571 1320 aaPredicted RBP9.4□□□□□ -0.9
VPS53-220ENST00000576149 LRRC72A6NJI9 287 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 SURF4O15260 269 aa9.4□□□□□ -0.91
VPS53-220ENST00000576149 ZSCAN9O15535 394 aaPredicted RBP9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms