RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PSD4Q8NDX1 1056 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 OR8J3Q8NGG0 315 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 OR4C3Q8NH37 302 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 C9orf43Q8TAL5 461 aaPredicted RBP8.52□□□□□ -1.05
VPS35-211ENST00000569950 SLC22A8Q8TCC7 542 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 SPPL2AQ8TCT8 520 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 CMTM5Q96DZ9 223 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 TAAR6Q96RI8 345 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 ADOQ96SZ5 270 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 Q9N2J8 555 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 A4GALTQ9NPC4 353 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 LRFN1Q9P244 771 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 TMEM181Q9P2C4 612 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 POLEQ07864 2286 aa8.52□□□□□ -1.05
VPS35-211ENST00000569950 ZGRF1Q86YA3 2104 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 RELNP78509 3460 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 ANKRD33BA6NCL7 494 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 LRRC3CA6NJW4 275 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 ATXN7O15265 892 aaPredicted RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 KIAA0513O60268 411 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 TRIM3O75382 744 aaPredicted RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 SLC25A12O75746 678 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 H6PDO95479 791 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 ANP32DO95626 131 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 KRT75O95678 551 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 EPPINO95925 133 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 NGFRP08138 427 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 CASP3P42574 277 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 CYB561P49447 251 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 NUDT2P50583 147 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 DSTNP60981 165 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 SLC25A3Q00325 362 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 CHRNEQ04844 493 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 BNIP1Q12981 228 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 CD226Q15762 336 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 PLEKHN1Q494U1 663 aaPredicted RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 LACTB2Q53H82 288 aaPredicted RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 RPS26P11Q5JNZ5 115 aaPredicted RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 HLA-DQA1Q5Y7H0 255 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 BHLHB9Q6PI77 547 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 OPN5Q6U736 354 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 RTL4Q6ZR62 310 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 ASB18Q6ZVZ8 466 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 NUP54Q7Z3B4 507 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 GPALPP1Q8IXQ4 340 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 TAGAPQ8N103 731 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 FBXW8Q8N3Y1 598 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 ADAMTS15Q8TE58 950 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 XAGE5Q8WWM1 108 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 ASB15Q8WXK1 588 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 JADE3Q92613 823 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 NSL1Q96IY1 281 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 COL21A1Q96P44 957 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 TRNT1Q96Q11 434 aaKnown RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 UTP23Q9BRU9 249 aaKnown RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 ANGPTL4Q9BY76 406 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 QRSL1Q9H0R6 528 aaKnown RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 TMEM38AQ9H6F2 299 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 EFCAB1Q9HAE3 211 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 RYDENQ9NUL5 291 aaKnown RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 TAS2R1Q9NYW7 299 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 CD300AQ9UGN4 299 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 TEKT2Q9UIF3 430 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 FAF1Q9UNN5 650 aaPredicted RBP8.51□□□□□ -1.05
VPS35-211ENST00000569950 NTNG1Q9Y2I2 539 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 ZNF451Q9Y4E5 1061 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 PCDHGB6Q9Y5F9 930 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 PCDHGA10Q9Y5H3 936 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 GTF3C1Q12789 2109 aa8.51□□□□□ -1.05
VPS35-211ENST00000569950 UBR5O95071 2799 aaPredicted RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 MPDZO75970 2070 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 HIVEP3Q5T1R4 2406 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 MYO18BQ8IUG5 2567 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 PRORSD1PA6NEY8 169 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 G3V3Y1 287 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 ADAM11O75078 769 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 REM1O75628 298 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 UGT2B17O75795 530 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 C1QL1O75973 258 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 GLSO94925 669 aaPredicted RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 WISP1O95388 367 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 UTS2O95399 124 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 OXSR1O95747 527 aaPredicted RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 SP1P08047 785 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 KRT16P08779 473 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 TBXA2RP21731 343 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 PPIBP23284 216 aaKnown RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 CRATP43155 626 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 GSK3BP49841 420 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 SLC7A2P52569 658 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 PSME3P61289 254 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 PSPHP78330 225 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 ARG2P78540 354 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 TXNL4AP83876 142 aaKnown RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 CEACAM7Q14002 265 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 ZNHIT3Q15649 155 aaPredicted RBP8.5□□□□□ -1.05
VPS35-211ENST00000569950 ZNF141Q15928 474 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 DECR1Q16698 335 aa8.5□□□□□ -1.05
VPS35-211ENST00000569950 MMEL1Q495T6 779 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms