RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZC4H2Q9NQZ6 224 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 PPIL1Q9Y3C6 166 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 A0A1W2PRQ8 180 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 A8MVJ9 347 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 GTPBP1O00178 669 aaKnown RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 PEPDP12955 493 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 CSNK2A2P19784 350 aaPredicted RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 BSGP35613 385 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 CCR6P51684 374 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 C19orf48Q6RUI8 117 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 GRASPQ7Z6J2 395 aaPredicted RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 SUN3Q8TAQ9 357 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 MSLNLQ96KJ4 702 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 AMDHD1Q96NU7 426 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 ALG8Q9BVK2 526 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 RNF208Q9H0X6 261 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 PAK6Q9NQU5 681 aaPredicted RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 PLXNA3P51805 1871 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 SHISA3A0PJX4 238 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 LANCL1O43813 399 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 RPN2P04844 631 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 MAT2AP31153 395 aaKnown RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 VSX2P58304 361 aaPredicted RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 ACBD7Q8N6N7 88 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 ATF6BQ99941 703 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 CACNG6Q9BXT2 260 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 RSPO3Q9BXY4 272 aaPredicted RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 SIRT3Q9NTG7 399 aaPredicted RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 PCYT1BQ9Y5K3 369 aaPredicted RBP13.59□□□□□ -0.23
VPS35-210ENST00000568784 PLXNA4Q9HCM2 1894 aa13.59□□□□□ -0.23
VPS35-210ENST00000568784 TEX13CA0A0J9YWL9 993 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 TEX46H3BTG2 121 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 LAG3P18627 525 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 BTN3A2P78410 334 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 ZNF547Q8IVP9 402 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 OR2T33Q8NG76 320 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 SUSD6Q92537 303 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 TMEM43Q9BTV4 400 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 GSDMCQ9BYG8 508 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 SLC7A7Q9UM01 511 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 ATG4BQ9Y4P1 393 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 PAK4O96013 591 aaPredicted RBP13.58□□□□□ -0.24
VPS35-210ENST00000568784 C1QBP02746 253 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 VIPR2P41587 438 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 ABATP80404 500 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 TPBGQ13641 420 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 GNA13Q14344 377 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 ENTPD8Q5MY95 495 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 KLHDC8AQ8IYD2 350 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 FBXO15Q8NCQ5 510 aaPredicted RBP13.58□□□□□ -0.24
VPS35-210ENST00000568784 OR13C5Q8NGS8 318 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 TRMT10AQ8TBZ6 339 aaKnown RBP13.58□□□□□ -0.24
VPS35-210ENST00000568784 HYLS1Q96M11 299 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 HINT3Q9NQE9 182 aaKnown RBP13.58□□□□□ -0.24
VPS35-210ENST00000568784 ZSCAN32Q9NX65 697 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 MRPS23Q9Y3D9 190 aaKnown RBP13.58□□□□□ -0.24
VPS35-210ENST00000568784 ASCC3Q8N3C0 2202 aaKnown RBP13.58□□□□□ -0.24
VPS35-210ENST00000568784 ANTXRLA6NF34 631 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 A8MUA0 341 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 PROM1O43490 865 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 EFCAB14O75071 495 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 RHOP08100 348 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 ATF4P18848 351 aaPredicted RBP13.58□□□□□ -0.24
VPS35-210ENST00000568784 ZNF628Q5EBL2 1059 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 GPR135Q8IZ08 494 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 OSTF1Q92882 214 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 ARHGAP9Q9BRR9 750 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 CHST2Q9Y4C5 530 aa13.58□□□□□ -0.24
VPS35-210ENST00000568784 CIB4A0PJX0 185 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 PSMD9O00233 223 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 MT-ND4P03905 459 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 TRAPPC2P0DI81 140 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 TRAPPC2BP0DI82 140 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 MESP2Q0VG99 397 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 PRPF38BQ5VTL8 546 aaKnown RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 SETD7Q8WTS6 366 aaKnown RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 DPAGT1Q9H3H5 408 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 MRPS30Q9NP92 439 aaKnown RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 WSB2Q9NYS7 404 aaPredicted RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 PRELID1Q9Y255 219 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 WDR45Q9Y484 360 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 DSPPQ9NZW4 1301 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 A0A0A6YYJ9 748 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 A0A0C4DFX4 3053 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 IGLON5A6NGN9 336 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 OLFM2O95897 454 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 SOD1P00441 154 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 LAMP2P13473 410 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 NAA10P41227 235 aaPredicted RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 CLPPQ16740 277 aaPredicted RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 TMEM201Q5SNT2 666 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 LINGO2Q7L985 606 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 SERPINA12Q8IW75 414 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 CDK20Q8IZL9 346 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 TMEM99Q8N816 258 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 KCT2Q8NC54 265 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 GCDHQ92947 438 aaPredicted RBP13.57□□□□□ -0.24
VPS35-210ENST00000568784 ARRDC3Q96B67 414 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 KLHL21Q9UJP4 597 aa13.57□□□□□ -0.24
VPS35-210ENST00000568784 TMEM129A0AVI4 362 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms