RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SERPINE3A8MV23 424 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 IMPA2O14732 288 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 BUB1O43683 1085 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 KINO60870 393 aaKnown RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 ZNF254O75437 659 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 SYNGR4O95473 234 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 ZNF18P17022 549 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 ATP5DP30049 168 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 UGT1A5P35504 534 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 RPL4P36578 427 aaKnown RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 NSFP46459 744 aaKnown RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 DHPSP49366 369 aaPredicted RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 SUCLG1P53597 346 aaKnown RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 OTUD4Q01804 1114 aaKnown RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 DPYSQ14117 519 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 RAB35Q15286 201 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 PKN2Q16513 984 aaKnown RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 ZNF57Q68EA5 555 aaPredicted RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 UFSP1Q6NVU6 142 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 DNM1P46Q6ZS02 220 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 ZNF410Q86VK4 478 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 AMZ2Q86W34 360 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 IQCA1Q86XH1 822 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 CENPSQ8N2Z9 138 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 TMCO5AQ8N6Q1 288 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 FBXO30Q8TB52 745 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 TAF4BQ92750 862 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 KRT35Q92764 455 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 IL22RA2Q969J5 263 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 TMEM45BQ96B21 275 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 TADA1Q96BN2 335 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 ZNF560Q96MR9 790 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 NOL4LQ96MY1 436 aaPredicted RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 FAM213AQ9BRX8 229 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 TRPV6Q9H1D0 765 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 NARFLQ9H6Q4 476 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 EHFQ9NZC4 300 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 NAP1L2Q9ULW6 460 aaPredicted RBP1.72□□□□□ -2.13
VPS35-207ENST00000568191 SCML2Q9UQR0 700 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 FKBP7Q9Y680 259 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 SLCO1B1Q9Y6L6 691 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 PTPRUQ92729 1446 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 METP08581 1390 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 PARD3Q8TEW0 1356 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 ANKRD30BQ9BXX2 1392 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 PLEKHG1Q9ULL1 1385 aa1.72□□□□□ -2.13
VPS35-207ENST00000568191 ZMYM6O95789 1325 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 TRBV6-6A0A0A6YYG2 114 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 IGHV7-81A0A0B4J1V7 117 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 CABYRO75952 493 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 TOXO94900 526 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 GOSR1O95249 250 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 CSF2P04141 144 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 PGK2P07205 417 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 IGFBP1P08833 259 aaPredicted RBP1.71□□□□□ -2.14
VPS35-207ENST00000568191 AREGP15514 252 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 CSNK1DP48730 415 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 EMDP50402 254 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 CASP9P55211 416 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 LIM2P55344 173 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 CCZ1BP86790 482 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 CCZ1P86791 482 aaPredicted RBP1.71□□□□□ -2.14
VPS35-207ENST00000568191 GFPT1Q06210 699 aaPredicted RBP1.71□□□□□ -2.14
VPS35-207ENST00000568191 KCNJ11Q14654 390 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 LRRC36Q1X8D7 754 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 DPY19L2P2Q6ZN68 376 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 C1orf186Q6ZWK4 172 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 ANKRD23Q86SG2 305 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 ZNF589Q86UQ0 364 aaPredicted RBP1.71□□□□□ -2.14
VPS35-207ENST00000568191 PARGQ86W56 976 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 LYPD1Q8N2G4 141 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 OR2AP1Q8NGE2 309 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 MARCH1Q8TCQ1 289 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 BLOC1S5Q8TDH9 187 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 ARNTL2Q8WYA1 636 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 FOPNLQ96NB1 174 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 CARD6Q9BX69 1037 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 SIRPDQ9H106 197 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 OR51J1Q9H342 316 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 FAM114A2Q9NRY5 505 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 FAM153AQ9UHL3 310 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 WSB1Q9Y6I7 421 aa1.71□□□□□ -2.14
VPS35-207ENST00000568191 C19orf81C9J6K1 198 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 ZNF324O75467 553 aaPredicted RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 MED6O75586 246 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 UFL1O94874 794 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 ZNF44P15621 663 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 CD1BP29016 333 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 CTNNA1P35221 906 aaKnown RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 CASP3P42574 277 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 HNRNPFP52597 415 aaKnown RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 NUP107P57740 925 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 YBEYP58557 167 aaPredicted RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 SRP54P61011 504 aaKnown RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 ACTN3Q08043 901 aaPredicted RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 NME3Q13232 169 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 BTG3Q14201 252 aaPredicted RBP1.7□□□□□ -2.14
VPS35-207ENST00000568191 SYPL1Q16563 259 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 TEX44Q53QW1 395 aa1.7□□□□□ -2.14
VPS35-207ENST00000568191 SLC39A4Q6P5W5 647 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms