RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 NCBP2P52298 156 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLK3-218ENST00000566926 ACTR3P61158 418 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 PPIAP62937 165 aaKnown RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 DUSP2Q05923 314 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 FADDQ13158 208 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 RIPK1Q13546 671 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 TRIM25Q14258 630 aaKnown RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 EXOSC7Q15024 291 aaKnown RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 LTB4RQ15722 352 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 TRMT12Q53H54 448 aaKnown RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 ZNF385BQ569K4 471 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 ZNF628Q5EBL2 1059 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 RNFT1Q5M7Z0 435 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 ANKRD26P1Q6NSI1 321 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 FAM180BQ6P0A1 224 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 LYPD8Q6UX82 237 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 TMEM64Q6YI46 380 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 ZNF621Q6ZSS3 439 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 SERPINA11Q86U17 422 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 SPPL2CQ8IUH8 684 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 PSMG3-AS1Q96PY0 264 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 KCTD14Q9BQ13 255 aaPredicted RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 THUMPD3Q9BV44 507 aaKnown RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 SH2D2AQ9NP31 389 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 DEPPQ9NTK1 212 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 THUMPD1Q9NXG2 353 aaKnown RBP12.34□□□□□ -0.43
CLK3-218ENST00000566926 SLAMF8Q9P0V8 285 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 POMPQ9Y244 141 aa12.34□□□□□ -0.43
CLK3-218ENST00000566926 DOPEY1Q5JWR5 2465 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 A0A087WV62 115 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 ANKRD33BA6NCL7 494 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 PRORSD1PA6NEY8 169 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CLIC1O00299 241 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 NME4O00746 187 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 PRRG2O14669 202 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 COQ9O75208 318 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 GMNNO75496 209 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 PDE5AO76074 875 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CPSF4O95639 269 aaKnown RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 HOXB6P17509 224 aaKnown RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 UQCRC2P22695 453 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 RFC3P40938 356 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CA7P43166 264 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 EMDP50402 254 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 ANXA11P50995 505 aaKnown RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 HBA1P69905 142 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 ELF3P78545 371 aaPredicted RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 MRPS35P82673 323 aaKnown RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 LIPEQ05469 1076 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CEACAM7Q14002 265 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 FLOT2Q14254 428 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 FXNQ16595 210 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 HYAL4Q2M3T9 481 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 C1QL3Q5VWW1 255 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 ARHGAP11AQ6P4F7 1023 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 ERICH5Q6P6B1 374 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 DNAJC14Q6Y2X3 702 aaPredicted RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 Q6ZPB1 254 aaPredicted RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 NUP54Q7Z3B4 507 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 FJX1Q86VR8 437 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CLECL1Q8IZS7 167 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 FAM109AQ8N4B1 249 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 OR10G3Q8NGC4 313 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 OR9A2Q8NGT5 310 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 SFXN5Q8TD22 340 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 DIO2Q92813 273 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 KAT2AQ92830 837 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CIDECQ96AQ7 238 aaPredicted RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 CCDC124Q96CT7 223 aaKnown RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 CLPTM1LQ96KA5 538 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 AMDHD1Q96NU7 426 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CPPED1Q9BRF8 314 aaPredicted RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 INPP5KQ9BT40 448 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 ITPAQ9BY32 194 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 TTTY12Q9BZ98 90 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 NXF5Q9H1B4 397 aaKnown RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 KAT8Q9H7Z6 458 aaKnown RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 TPT1P8Q9HAU6 139 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CMTM6Q9NX76 183 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 SLC25A37Q9NYZ2 338 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 ZNF835Q9Y2P0 537 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 CHCHD2Q9Y6H1 151 aaPredicted RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 PHF3Q92576 2039 aaKnown RBP12.33□□□□□ -0.44
CLK3-218ENST00000566926 NCKAP5O14513 1909 aa12.33□□□□□ -0.44
CLK3-218ENST00000566926 HECTD1Q9ULT8 2610 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 FRG2CA6NGY1 282 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 G3V3Y1 287 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 CCL21O00585 134 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 TO15178 435 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 CDC40O60508 579 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLK3-218ENST00000566926 ABCB7O75027 752 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 PPM1BO75688 479 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 SNX4O95219 450 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 C6orf47O95873 294 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 GPX2P18283 190 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 ABCD3P28288 659 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 HTR1EP28566 365 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 PTGS2P35354 604 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 KRT20P35900 424 aa12.32□□□□□ -0.44
CLK3-218ENST00000566926 DNASE1L1P49184 302 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms