RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 EBF4Q9BQW3 602 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 CCDC28BQ9BUN5 200 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 TMEM120AQ9BXJ8 343 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 DEFB127Q9H1M4 99 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 UBQLN3Q9H347 655 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 GALNT9Q9HCQ5 603 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 DUSP22Q9NRW4 184 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 QPCTLQ9NXS2 382 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 KLRF1Q9NZS2 232 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 B4GALT7Q9UBV7 327 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 BTNL2Q9UIR0 455 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 ERRFI1Q9UJM3 462 aaPredicted RBP8.56□□□□□ -1.04
LDLR-211ENST00000560173 DCTN4Q9UJW0 460 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 TRIM33Q9UPN9 1127 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 SLC5A6Q9Y289 635 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 C15orf41Q9Y2V0 281 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 HRH3Q9Y5N1 445 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 LIPGQ9Y5X9 500 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 FBN2P35556 2912 aa8.56□□□□□ -1.04
LDLR-211ENST00000560173 ICE1Q9Y2F5 2266 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 TRGV8A0A0C4DH27 118 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 RNF103-CHMP3A0A140T963 221 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 A0A1B0GTH9 108 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 FADS1O60427 444 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 SLC22A3O75751 556 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 DNAJC8O75937 253 aaPredicted RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 AGFG2O95081 481 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 KCNH1O95259 989 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 PGRP06401 933 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 KRT16P08779 473 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 ALOX5P09917 674 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 RNF224P0DH78 156 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 ELAVL4P26378 380 aaKnown RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 PTPN6P29350 595 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 EVI2BP34910 448 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 CA7P43166 264 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 ZFP36L2P47974 494 aaKnown RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 MASP1P48740 699 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 MRPL19P49406 292 aaKnown RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 MAN2A2P49641 1150 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 MNAT1P51948 309 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 GAS1P54826 345 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 PSMD4P55036 377 aaKnown RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 IRX1P78414 480 aaPredicted RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 GTF3C1Q12789 2109 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 KRT72Q14CN4 511 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 C3AR1Q16581 482 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.55□□□□□ -1.04
LDLR-211ENST00000560173 CDC73Q6P1J9 531 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 ARHGAP11AQ6P4F7 1023 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 BHLHB9Q6PI77 547 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 ANGPTL8Q6UXH0 198 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 TRILQ7L0X0 811 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 SPPL2CQ8IUH8 684 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 CLEC4FQ8N1N0 589 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 MIER2Q8N344 545 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 COX18Q8N8Q8 333 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 VPS37AQ8NEZ2 397 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 OR9I1Q8NGQ6 314 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 FAM110BQ8TC76 370 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 JADE3Q92613 823 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 RELTQ969Z4 430 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 RAB3IPQ96QF0 476 aaPredicted RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 STACQ99469 402 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 YIPF4Q9BSR8 244 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 BTBD2Q9BX70 525 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 ACTRT3Q9BYD9 372 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 PIGUQ9H490 435 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 SERHL2Q9H4I8 314 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 GIN1Q9NXP7 522 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 FLRT3Q9NZU0 649 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 MRTO4Q9UKD2 239 aaKnown RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 FAF1Q9UNN5 650 aaPredicted RBP8.55□□□□□ -1.04
LDLR-211ENST00000560173 ABCG2Q9UNQ0 655 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 WIF1Q9Y5W5 379 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 CREBBPQ92793 2442 aa8.55□□□□□ -1.04
LDLR-211ENST00000560173 MYO7BQ6PIF6 2116 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 CRYBG3Q68DQ2 2970 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 A0A1B0GUH1 482 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 A0A1B0GVC2 190 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 C2orf72A6NCS6 295 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 B4DXG7 233 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 GNB5O14775 395 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 SLC22A2O15244 555 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 LRRTM2O43300 516 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 SCO2O43819 266 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 HCN1O60741 890 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 PDE9AO76083 593 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 UBOX5O94941 541 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 KCNK2O95069 426 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 UTS2O95399 124 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 CPSF4O95639 269 aaKnown RBP8.54□□□□□ -1.04
LDLR-211ENST00000560173 LDLRP01130 860 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 IL6P05231 212 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 ABOP16442 354 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 ENDOUP21128 410 aaKnown RBP8.54□□□□□ -1.04
LDLR-211ENST00000560173 UQCRC2P22695 453 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 GDF1P27539 372 aa8.54□□□□□ -1.04
LDLR-211ENST00000560173 ADSLP30566 484 aaPredicted RBP8.54□□□□□ -1.04
LDLR-211ENST00000560173 PTGS2P35354 604 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms