RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CASD1Q96PB1 797 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 ALG8Q9BVK2 526 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 TTYH1Q9H313 450 aaPredicted RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 TM7SF3Q9NS93 570 aa10.64□□□□□ -0.71
LDLR-208ENST00000558518 NFKBIL1Q9UBC1 381 aaPredicted RBP10.64□□□□□ -0.71
LDLR-208ENST00000558518 TMPRSS11DO60235 418 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 FZD7O75084 574 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 UBXN7O94888 489 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 HSD3B1P14060 373 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 POU3F2P20265 443 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 HOXC8P31273 242 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 NAA10P41227 235 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 LIMS1P48059 325 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 VEGFCP49767 419 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 DEFA5Q01523 94 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 HSF2Q03933 536 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 RAB40BQ12829 278 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ELAVL2Q12926 359 aaKnown RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 HES5Q5TA89 166 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 TMEM65Q6PI78 240 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ARSKQ6UWY0 536 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 LIPIQ6XZB0 460 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ADGRF3Q8IZF5 1079 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 CBARPQ8N350 705 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 OR9A1PQ8NGU1 263 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 PIGXQ8TBF5 258 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 TMEM255BQ8WV15 326 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ARHGAP9Q9BRR9 750 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 SLC25A18Q9H1K4 315 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 FMO6PO60774 539 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 FGBP02675 491 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 HPXP02790 462 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 BLVRAP53004 296 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 LGALSLQ3ZCW2 172 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 SFRP5Q5T4F7 317 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ZNF782Q6ZMW2 699 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 RNF180Q86T96 592 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ZNF687Q8N1G0 1237 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 NXPE2Q96DL1 559 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 IFT27Q9BW83 186 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 GPR174Q9BXC1 333 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 RANBP3Q9H6Z4 567 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 CWH43Q9H720 699 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 HINT3Q9NQE9 182 aaKnown RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 SEMA4GQ9NTN9 838 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 EXOSC1Q9Y3B2 195 aaKnown RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 MAB21L2Q9Y586 359 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 TRBV23OR9-2A0A075B6M9 112 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 A0A1W2PPL8 197 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 PRAMEF27A3QJZ7 478 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 MEIS3P1A6NDR6 274 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 CCL16O15467 120 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ARPC5O15511 151 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 CA12O43570 354 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 MPC2O95563 127 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 RPL3P39023 403 aaKnown RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 SELENOPP49908 381 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ST3GAL2Q16842 350 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 TP53I3Q53FA7 332 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 C3orf38Q5JPI3 329 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ASTLQ6HA08 431 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 RTL4Q6ZR62 310 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 CXXC5Q7LFL8 322 aaKnown RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 KIAA0907Q7Z7F0 614 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 SLC9B2Q86UD5 537 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 RPLP0P6Q8NHW5 317 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 GRHL3Q8TE85 626 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 LINC00052Q96N35 136 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 TRAF4Q9BUZ4 470 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 SEMA4CQ9C0C4 833 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 SAV1Q9H4B6 383 aaPredicted RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 CACYBPQ9HB71 228 aaKnown RBP10.63□□□□□ -0.71
LDLR-208ENST00000558518 MCCC2Q9HCC0 563 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 TMEM138Q9NPI0 162 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 PRDM9Q9NQV7 894 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 ZSCAN32Q9NX65 697 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 MGAT4CQ9UBM8 478 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 FBXL4Q9UKA2 621 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 RCE1Q9Y256 329 aa10.63□□□□□ -0.71
LDLR-208ENST00000558518 GLTPD2A6NH11 291 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 L7N2F9 121 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 CHRM4P08173 479 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 HSD3B2P26439 372 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 PNLIPRP1P54315 467 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 STK11Q15831 433 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 OCLNQ16625 522 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 FAM129CQ86XR2 697 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 ARL14Q8N4G2 192 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 OR4Q3Q8NH05 313 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 CREB3L1Q96BA8 519 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 WDR89Q96FK6 387 aaPredicted RBP10.62□□□□□ -0.71
LDLR-208ENST00000558518 MCHR1Q99705 422 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 ZNF559Q9BR84 538 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 C1QTNF7Q9BXJ2 289 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 MYNNQ9NPC7 610 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 F5P12259 2224 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 VWA8A3KMH1 1905 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 FAM171A2A8MVW0 826 aa10.62□□□□□ -0.71
LDLR-208ENST00000558518 ARPC1BO15143 372 aaKnown RBP10.62□□□□□ -0.71
LDLR-208ENST00000558518 CHST10O43529 356 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms