RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 PAWRQ96IZ0 340 aaKnown RBP11.56□□□□□ -0.56
LDLR-205ENST00000557933 ARHGAP9Q9BRR9 750 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 ATP13A2Q9NQ11 1180 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 HINT3Q9NQE9 182 aaKnown RBP11.56□□□□□ -0.56
LDLR-205ENST00000557933 UBXN7O94888 489 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 LRG1P02750 347 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 PROS1P07225 676 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 GABRA5P31644 462 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 BSGP35613 385 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 PPP3R1P63098 170 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 KCNC3Q14003 757 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 TEAD2Q15562 447 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 NTRK2Q16620 822 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 OCLNQ16625 522 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 SLC36A4Q6YBV0 504 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 FAM92BQ6ZTR7 304 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 SERPINA12Q8IW75 414 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 RFLNBQ8N5W9 214 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 C17orf47Q8NEP4 570 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 MED30Q96HR3 178 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 LGR4Q9BXB1 951 aa11.56□□□□□ -0.56
LDLR-205ENST00000557933 EIF3KQ9UBQ5 218 aaKnown RBP11.56□□□□□ -0.56
LDLR-205ENST00000557933 SOD2P04179 222 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 C8AP07357 584 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 SNRPBP14678 240 aaKnown RBP11.55□□□□□ -0.56
LDLR-205ENST00000557933 SYN1P17600 705 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 MC3RP41968 323 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 DEFB103AP81534 67 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 DGCR2P98153 550 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 BNC1Q01954 994 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 ZNF311Q5JNZ3 666 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 TJAP1Q5JTD0 557 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 C9orf64Q5T6V5 341 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 ZNF793Q6ZN11 406 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 C17orf64Q86WR6 236 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 ARL14Q8N4G2 192 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 FAM181AQ8N9Y4 354 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 DPH1Q9BZG8 443 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 P2RX2Q9UBL9 471 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 SCML1Q9UN30 329 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 CEP290O15078 2479 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 RGS11O94810 467 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 ATF4P18848 351 aaPredicted RBP11.55□□□□□ -0.56
LDLR-205ENST00000557933 HLA-DMAP28067 261 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 OC90Q02509 493 aaPredicted RBP11.55□□□□□ -0.56
LDLR-205ENST00000557933 COX10Q12887 443 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 AGERQ15109 404 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 C16orf62Q7Z3J2 963 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 TFGQ92734 400 aaPredicted RBP11.55□□□□□ -0.56
LDLR-205ENST00000557933 ZDHHC5Q9C0B5 715 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 SYNPO2LQ9H987 977 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 IL23AQ9NPF7 189 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 SLC13A4Q9UKG4 626 aa11.55□□□□□ -0.56
LDLR-205ENST00000557933 ANKRD61A6NGH8 418 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 GCGRP47871 477 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 SOX9P48436 509 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 CDK5Q00535 292 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 TPBGQ13641 420 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 EOGTQ5NDL2 527 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 HTR3DQ70Z44 454 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 KANSL1Q7Z3B3 1105 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 CDH24Q86UP0 819 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 ZNF680Q8NEM1 530 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 OR9A2Q8NGT5 310 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 TRIM43Q96BQ3 446 aaPredicted RBP11.54□□□□□ -0.56
LDLR-205ENST00000557933 TRMT2BQ96GJ1 504 aaKnown RBP11.54□□□□□ -0.56
LDLR-205ENST00000557933 ZSWIM3Q96MP5 696 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 MARVELD1Q9BSK0 173 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 FAIM2Q9BWQ8 316 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 SGPP1Q9BX95 441 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 AUNIPQ9H7T9 357 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 GLTPQ9NZD2 209 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 KLHL42Q9P2K6 505 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 ATG4BQ9Y4P1 393 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 BACE2Q9Y5Z0 518 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 A0A087WV48 116 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 SERTM1A2A2V5 107 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 J3QLW9 94 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 FOXE1O00358 373 aaPredicted RBP11.54□□□□□ -0.56
LDLR-205ENST00000557933 SMAD9O15198 467 aaKnown RBP11.54□□□□□ -0.56
LDLR-205ENST00000557933 ERI3O43414 337 aaKnown RBP11.54□□□□□ -0.56
LDLR-205ENST00000557933 ADRB1P08588 477 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 PRG2P13727 222 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 ZNF19P17023 458 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 NOS3P29474 1203 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 PPP2R1BP30154 601 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 WASP42768 502 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 TEKQ02763 1124 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 C3orf38Q5JPI3 329 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 C6orf132Q5T0Z8 1188 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 UBE3DQ7Z6J8 389 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 TMEFF1Q8IYR6 380 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 ZNF687Q8N1G0 1237 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 PIAS4Q8N2W9 510 aaPredicted RBP11.54□□□□□ -0.56
LDLR-205ENST00000557933 LRRC17Q8N6Y2 441 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 GANCQ8TET4 914 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 OR5P2Q8WZ92 322 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 RIT1Q92963 219 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 PMEPA1Q969W9 287 aa11.54□□□□□ -0.56
LDLR-205ENST00000557933 NKX3-1Q99801 234 aaPredicted RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms